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The map label for this gene is ppdA

Identifier: 157162278

GI number: 157162278

Start: 2982026

End: 2982496

Strand: Reverse

Name: ppdA

Synonym: EcHS_A2972

Alternate gene names: 157162278

Gene position: 2982496-2982026 (Counterclockwise)

Preceding gene: 157162279

Following gene: 157162277

Centisome position: 64.23

GC content: 54.14

Gene sequence:

>471_bases
ATGAAAACACAACGTGGTTATACGCTGATTGAAACGCTGGTCGCGATGCTGATTTTGGTCATGCTAAGCGCAAGTGGACT
CTATGGCTGGCAATACTGGCAGCAGTCGCAACGGCTATGGCAAACCGCCAGCCAGGCGCGGGACTATTTGCTCTATTTAC
GTGAAGATGCCAACTGGCATAACCGCGACCACAGTATCAGCGTTATCAGGGAGGGGACGTTATGGTGCCTTGTGAGTTCC
GCTGCTGGGGCCAATACCTGTCATGGCAGTTCACCATTGGTCTTTGTGCCACGCTGGCCCGAAGTCGAAATGAGCGACCT
GACACCTTCGCTTGCTTTCTTTGGCCTGCGCAATACCGCATGGGCCGGGCATATTCGCTTCAAAAACTCAACGGGCGAGT
GGTGGCTGGTGGTTTCGCCGTGGGGAAGACTCCGGCTTTGTCAGCAAGGAGAAACAGAAGGATGCCTGTAA

Upstream 100 bases:

>100_bases
ATTTTGCAACGTCCTGCAACGGCGTAAATAGTCCGGAAGATGCGCCGAAGAAATAGAAACTGGCCCTCGTCTTTTTTTCT
CCTCGCTCCATACTGCCGGC

Downstream 100 bases:

>100_bases
AAGAGCAAGGTTTTTCTCTGCTGGAAGTGTTGATTGCTATGGCGATCAGTAGCGTATTGTTGCTGGGGGCGGCACGCTTT
CTGCCTGCGTTACAGCGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSS
AAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL

Sequences:

>Translated_156_residues
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSS
AAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
>Mature_156_residues
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSS
AAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL

Specific function: Not yet known

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789190, Length=156, Percent_Identity=100, Blast_Score=322, Evalue=7e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PPDA_ECOLI (P33554)

Other databases:

- EMBL:   X03966
- EMBL:   U29581
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C65065
- RefSeq:   AP_003389.1
- RefSeq:   NP_417303.1
- ProteinModelPortal:   P33554
- SMR:   P33554
- STRING:   P33554
- EnsemblBacteria:   EBESCT00000000571
- EnsemblBacteria:   EBESCT00000014351
- GeneID:   945393
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2794
- KEGG:   eco:b2826
- EchoBASE:   EB2006
- EcoGene:   EG12081
- eggNOG:   COG2165
- GeneTree:   EBGT00050000010228
- HOGENOM:   HBG416958
- OMA:   RVQANAY
- ProtClustDB:   PRK10506
- BioCyc:   EcoCyc:EG12081-MONOMER
- Genevestigator:   P33554
- InterPro:   IPR012902
- InterPro:   IPR001120
- TIGRFAMs:   TIGR02532

Pfam domain/function: PF07963 N_methyl

EC number: NA

Molecular weight: Translated: 17866; Mature: 17866

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWH
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC
NRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTA
CCCCEEEEEECCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCHHHEEECCCCC
WAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
EEEEEEEECCCCCEEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWH
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC
NRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTA
CCCCEEEEEECCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCHHHEEECCCCC
WAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
EEEEEEEECCCCCEEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814