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The map label for this gene is ppdB

Identifier: 157162277

GI number: 157162277

Start: 2981472

End: 2982035

Strand: Reverse

Name: ppdB

Synonym: EcHS_A2971

Alternate gene names: 157162277

Gene position: 2982035-2981472 (Counterclockwise)

Preceding gene: 157162278

Following gene: 157162276

Centisome position: 64.22

GC content: 52.3

Gene sequence:

>564_bases
ATGCCTGTAAAAGAGCAAGGTTTTTCTCTGCTGGAAGTGTTGATTGCTATGGCGATCAGTAGCGTATTGTTGCTGGGGGC
GGCACGCTTTCTGCCTGCGTTACAGCGTGAAAGTTTAACGAGCACCCGTAAGCTGGCGCTGGAAGATGAAATCTGGCTGC
GGGTATTTACCGTCGCGAAGCATCTCCAGAGGGCGGGTTATTGTCATGGCATCTGTACCGGCGAAGGGCTGGAAATTGTC
GGACAGGGTGACTGTGTCATTGTGCAGTGGGATGCGAACAGTAACGGTATCTGGGATCGCGAACCGGTAAAAGAGTCCGA
CCAGATTGGATTTCGTCTGAAGGAGCATGTGCTGGAAACGCTACGCGGTGCGACATCCTGTGAAGGTAAGGGCTGGGATA
AAGTCACTAATCCGGATGCCATCATTATCGACACTTTTCAGGTCGTACGTCAGGATGTCAGCGGCTTCTCGCCGGTGTTG
ACGGTTAATATGCGTGCTGCCAGTAAGTCTGAACCGCAAACCGTGGTGAATGCCAGCTATAGCGTGACAGGATTCAACCT
GTGA

Upstream 100 bases:

>100_bases
GGGCCGGGCATATTCGCTTCAAAAACTCAACGGGCGAGTGGTGGCTGGTGGTTTCGCCGTGGGGAAGACTCCGGCTTTGT
CAGCAAGGAGAAACAGAAGG

Downstream 100 bases:

>100_bases
ACCGCGAAAAGGGTGTTTCGTCACTGGCTCTGGTCCTGATGCTGCTGGTTTTGGGTAGTTTGCTATTACAAGGAATGAGC
CAACAGGATCGCAGTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIV
GQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMRAASKSEPQTVVNASYSVTGFNL

Sequences:

>Translated_187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIV
GQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMRAASKSEPQTVVNASYSVTGFNL
>Mature_186_residues
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVG
QGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLT
VNMRAASKSEPQTVVNASYSVTGFNL

Specific function: Not yet known

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=100, Blast_Score=385, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PPDB_ECOLI (P08371)

Other databases:

- EMBL:   X03966
- EMBL:   U29581
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   B65065
- RefSeq:   AP_003388.1
- RefSeq:   NP_417302.1
- ProteinModelPortal:   P08371
- SMR:   P08371
- STRING:   P08371
- EnsemblBacteria:   EBESCT00000001442
- EnsemblBacteria:   EBESCT00000016067
- GeneID:   948985
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW5451
- KEGG:   eco:b2825
- EchoBASE:   EB1145
- EcoGene:   EG11156
- eggNOG:   COG4795
- GeneTree:   EBGT00050000009352
- HOGENOM:   HBG416957
- OMA:   NRRMPVK
- ProtClustDB:   PRK10557
- BioCyc:   EcoCyc:EG11156-MONOMER
- Genevestigator:   P08371
- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120
- PIRSF:   PIRSF004525
- TIGRFAMs:   TIGR02532

Pfam domain/function: PF07963 N_methyl

EC number: NA

Molecular weight: Translated: 20520; Mature: 20389

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HLQRAGYCHGICTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCEEECCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCE
SVTGFNL
EEEECCC
>Mature Secondary Structure 
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HLQRAGYCHGICTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCEEECCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVNASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCE
SVTGFNL
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814