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The map label for this gene is syd

Identifier: 157162247

GI number: 157162247

Start: 2942944

End: 2943489

Strand: Reverse

Name: syd

Synonym: EcHS_A2937

Alternate gene names: 157162247

Gene position: 2943489-2942944 (Counterclockwise)

Preceding gene: 157162253

Following gene: 157162246

Centisome position: 63.39

GC content: 47.99

Gene sequence:

>546_bases
GTGGACGATTTGACCGCACAAGCCCTGAAAGATTTTACTGCACGCTACTGCGATGCGTGGCATGAAGAGCATAAAAGCTG
GCCGTTAAGTGAGGAACTGTACGGTGTTCCTTCACCGTGCATTATTTCAACTACCGAAGATGCCGTATACTGGCAACCCC
AGCCGTTTACCGGGGAACAAAATGTAAACGCGGTTGAACGCGCTTTTGATATTGTGATACAACCCACAATTCATACCTTT
TATACGACTCAGTTTGCCGGGGATATGCACGCGCAGTTTGGCGATATCAAACTGACATTGCTGCAAACCTGGAGTGAAGA
CGACTTCCGTCGGGTGCAGGAAAATCTGATTGGTCATCTGGTGACTCAGAAAAGGCTAAAACTGCCGCCCACGCTATTTA
TCGCGACGCTGGAAGAAGAGTTAGAGGTCATCTCGGTGTGTAATCTCTCCGGTGAAGTGTGCAAAGAGACGCTGGGAACA
CGTAAACGGACGCATTTAGCCTCAAATCTTGCGGAATTCCTTAATCAACTTAAGCCTCTTCTGTAA

Upstream 100 bases:

>100_bases
CGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGT
TTAAGTGAAGAGAGAAATTA

Downstream 100 bases:

>100_bases
TCCAAATACCCCATCTGGTTGTGAGAGATCTCTTACAGACCCTGTAGGAGATCGCCAGGAAATAAGCGAATACTTAAAAA
GATAAGAATCGTTATTTTCA

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTF
YTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
RKRTHLASNLAEFLNQLKPLL

Sequences:

>Translated_181_residues
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTF
YTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
RKRTHLASNLAEFLNQLKPLL
>Mature_181_residues
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTF
YTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
RKRTHLASNLAEFLNQLKPLL

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=181, Percent_Identity=100, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_ECO24 (A7ZQN6)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001464115.1
- ProteinModelPortal:   A7ZQN6
- SMR:   A7ZQN6
- STRING:   A7ZQN6
- EnsemblBacteria:   EBESCT00000021144
- GeneID:   5588303
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_3097
- eggNOG:   NOG05748
- GeneTree:   EBGT00050000010627
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- ProtClustDB:   PRK04968
- BioCyc:   ECOL331111:ECE24377A_3097-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20709; Mature: 20709

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEECCCCCEEECCCCCCCCC
NVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHL
CHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
VTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
L
C
>Mature Secondary Structure
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEECCCCCEEECCCCCCCCC
NVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHL
CHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHH
VTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA