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The map label for this gene is ydhX [H]

Identifier: 157161136

GI number: 157161136

Start: 1772369

End: 1773088

Strand: Reverse

Name: ydhX [H]

Synonym: EcHS_A1752

Alternate gene names: 157161136

Gene position: 1773088-1772369 (Counterclockwise)

Preceding gene: 157161137

Following gene: 157161135

Centisome position: 38.18

GC content: 49.86

Gene sequence:

>720_bases
ATGTCATGGATAGGGTGGACAGTTGCAGCCACTGCATTAGGGGATAATCAGATGTCCTTCACTCGACGCAAATTTGTTCT
GGGGATGGGAACAGTAATCTTTTTTACTGGTTCTGCGTCTTCTCTGTTAGCGAACACGAGGCAAGAAAAGGAAGTTCGGT
ATGCCATGATTCATGACGAGTCACGGTGCAATGGCTGTAATATTTGCGCCCGCGCATGCCGTAAAACTAACCACGTCCCC
GCTCAGGGAAGCCGTTTATCGATAGCACACATTCCAGTCACCGATAACGACAACGAAACGCAGTATCACTTTTTTCGCCA
GTCATGTCAGCACTGCGAAGATGCTCCGTGCATCGACGTATGCCCGACGGGGGCATCGTGGCATGATGAGCAGGGGATCG
TGCGGGTAGAAAAATCGCAGTGCATCGGCTGCAGTTATTGCATTGGCGCTTGTCCGTACCAGGTTCGCTACCTTAACCCT
GTCACTAAAGTGGCAGATAAATGTGATTTCTGCGCTGAGTCCCGACTGGCAAAAGGCTTTCCGCCCATTTGCGTCAGCGC
CTGTCCGGAACACGCATTGATCTTTGGTCGCGAAGATAGCCCAGAAATTCAGGCGTGGTTGCAGGATAATAAATACTATC
AATATCAGCTACCTGGTGCCGGGAAACCGCATCTGTATCGCCGGTTCGGTCAACATTTGATTAAAAAGGAAAATGTATGA

Upstream 100 bases:

>100_bases
GTACTTGTTTAGCGAGCGATTTATGACCTATGGCAAGGCTTATGGCTTATGCGAATGGTTCGAGGTAGAGCAGTTTCAGA
ACCCCTGAAATTTCAGGGAG

Downstream 100 bases:

>100_bases
ACCCGTCGCAACATGCTGAACAGTTTCAGAGCCAGTTAGCGAACTATGTGCCACAGTTCACTCCCGAATTTTGGCCGGTG
TGGTTGATCATTGCCGGAGT

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Sequences:

>Translated_239_residues
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVP
AQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNP
VTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>Mature_238_residues
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPA
QGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPV
TKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV

Specific function: Unknown

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=222, Percent_Identity=99.0990990990991, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI2367345, Length=213, Percent_Identity=49.2957746478873, Blast_Score=215, Evalue=2e-57,
Organism=Escherichia coli, GI1787122, Length=155, Percent_Identity=38.7096774193548, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787872, Length=152, Percent_Identity=38.8157894736842, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789370, Length=209, Percent_Identity=31.1004784688995, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790326, Length=240, Percent_Identity=27.5, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787749, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789067, Length=158, Percent_Identity=34.8101265822785, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787963, Length=151, Percent_Identity=28.476821192053, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=144, Percent_Identity=36.1111111111111, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=34.4594594594595, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787740, Length=90, Percent_Identity=34.4444444444444, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787478, Length=86, Percent_Identity=34.8837209302326, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26864; Mature: 26733

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHCHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDE
CCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHCHHHHHEEEEEEECC
SRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDV
CCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEE
CPTGASWHDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGF
CCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
PPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
CCHHHHCCCCCEEEECCCCCHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]