Click here to switch to the map view.

The map label for this gene is ynfC [H]

Identifier: 157161044

GI number: 157161044

Start: 1678882

End: 1679628

Strand: Reverse

Name: ynfC [H]

Synonym: EcHS_A1658

Alternate gene names: 157161044

Gene position: 1679628-1678882 (Counterclockwise)

Preceding gene: 157161053

Following gene: 157161041

Centisome position: 36.17

GC content: 43.64

Gene sequence:

>747_bases
ATGATTGAGAATCATCTCTACTCTCTGGTGACTGTTGTGAAATACAAATTACTACCATGCTTACTCGCGATATTCCTCAC
AGGATGTGACCGCACAGAGGTAACACTTTCATTTACCCCTGAGATGGCCAGTTTCTCTAATGAATTCGATTTTGATCCGC
TGCGTGGTCCGGTAAAAGATTTCACTCAGACATTAATGGATGAGCAAGGTGAAGTGACGAAACGTGTTTCTGGGACTTTG
TCGGAAGAAGGCTGTTTTGATTCACTCGAATTACTGGATCTGGAAAATAATACCGTGGTCGCTCTGGTACTGGACGCCAA
TTATTACCGTGATGCCGAGACGCTGGAGAAGAGAGTACGTTTACAGGGAAAATGCCAGCTAGCAGAATTACCTTCTGCCG
GGGTGAGTTGGGAAACCGATGATAATGGCTTCGTGATTAAAGCCAGCAGCAAACAAATGCAGATGGAATATCGCTATGAT
GATCAGGGTTATCCGCTGGGTAAAACCACGAAAAGTAACGACAAAACATTATCTGTCAGCGCCACGCCATCAACGGATCC
GATCAAAAAATTAGATTACACAGCGGTTGCTTTACTGAATAATCAACGGGTTGGTAATGTAAAACAGAGCTGTGAATATG
ACAGTCACGCTAATCCGGTGGACTGTCAGCTAATCATTGTTGATGAAGGAGTAAAACCCGCCGTCGAACGGGTTTACACC
ATCAAAAATACGATCGATTATTATTAA

Upstream 100 bases:

>100_bases
AGCGCGGCACAGCAGGTTGAGAGTTTCATCATAAGCTCCTTACGCGAAGATAACTTCTTTAAGCATAGCATTTAACGTGT
AAAGTACTGTATTTGCTACT

Downstream 100 bases:

>100_bases
TGCTATTGTGCGGTCGGCTTCAGGAGAGTCTGACCCGGTGTTTTGTGCTCTGCCAGATACTGATGCTGGAATATACACAT
GCGAATGGCATTACGATATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MIENHLYSLVTVVKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTL
SEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYD
DQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVALLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYT
IKNTIDYY

Sequences:

>Translated_248_residues
MIENHLYSLVTVVKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTL
SEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYD
DQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVALLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYT
IKNTIDYY
>Mature_248_residues
MIENHLYSLVTVVKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTL
SEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYD
DQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVALLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYT
IKNTIDYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family [H]

Homologues:

Organism=Escherichia coli, GI87081939, Length=236, Percent_Identity=99.1525423728814, Blast_Score=486, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010646
- ProDom:   PD120112 [H]

Pfam domain/function: PF06788 UPF0257 [H]

EC number: NA

Molecular weight: Translated: 27846; Mature: 27846

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENHLYSLVTVVKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHH
FTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVR
HHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHH
LQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVS
HCCCEEEECCCCCCCCEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
ATPSTDPIKKLDYTAVALLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYT
CCCCCCCHHHHCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHH
IKNTIDYY
HHHHCCCC
>Mature Secondary Structure
MIENHLYSLVTVVKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRGPVKD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCCCCCCHHH
FTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAETLEKRVR
HHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHH
LQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKSNDKTLSVS
HCCCEEEECCCCCCCCEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEEEE
ATPSTDPIKKLDYTAVALLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEGVKPAVERVYT
CCCCCCCHHHHCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHH
IKNTIDYY
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA