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The map label for this gene is dctD [H]

Identifier: 156978283

GI number: 156978283

Start: 2161432

End: 2162655

Strand: Reverse

Name: dctD [H]

Synonym: VIBHAR_07090

Alternate gene names: 156978283

Gene position: 2162655-2161432 (Counterclockwise)

Preceding gene: 156978284

Following gene: 156978282

Centisome position: 98.12

GC content: 45.67

Gene sequence:

>1224_bases
ATGCATAATCCCGTTTTCTTTGTTGATGATGAACCCCATATCCGTGATGCGGTTACTCAAGCGCTATTAATCGAAGGGAT
TGACGTCACTTGCTTTCCAAACGCAGTTGAAGCGCTGCAACAAATAGACCCAAGCGCACCGGCATTGATCATCACTGATA
TCCACATGCCCGTGATGAATGGCCTAGAGTTTATGCGCACACTGCTAGGCAAAAATAGTCACTTTCAATTTATCGTCTTA
ACCGGCCATGGCGATGTGAAAACTGCCGTCGAAGCGATGAAGAGTGGTGCGTACGATTTTCTCGAAAAACCCTTCTCTAC
CGAACAGTTACTTAAGTCACTTAATAACGCTGGCGACAAGTTGGCCTTATTACAAGAAAACGTCTGGCTTAAAAAAGAAC
TCGACATGCAAACTCATGTTGGTCCCAAGATGATTGGTCACAGCCAAGCCATGGTCGACATTCGCCGTACCTTGATCAGC
ACCCCGCTCCACCAGCCGCTGATTTTTGTCGGTGAAGATGGAACAGGGAGAAGACTGGCTGCGCAGTTTGCTCACGATAT
TCACGCCTCACCGGAAAATGAATTGTTCATTGCTTCTGGCGAAGATTTGTACGAGCTTTCTCTCGATGCACTAGACAAAG
CCGTACATCATCTTACGGACGGTAAAAGCCATTGCAGTTTGTACCTGCACAGTGCAGAACACATCTCGACAAAACAGTGG
CAATGCTTATTTGAACACCCAAAACTGCAACGTGTCTTTGGTGCAGCCAACACAGTCGACAAAGGCATTGAAAGCTCAGT
AAAGATGATTCGTATGCCAAGCTTGAATGAACGCAAAGAAGACATCGGTCCCCTATACAAACACTTTGTGCGTCACGCAG
CGAGTCGCTATCAACTCCAACCTCCTCAGATTAGTCTCGATGAGGTAAAACGGGTTACGGAACTCGATTGGCCTGAAAAC
ATCAAACAATTGAGGCAATTTGCGGAGTTAAGAGCGCTAAAACCCGATGTGTTTCGTATGGAGGATTGGAGCAGTGAAAA
GAGCATCGAAATCCAAAGTATGACTCAACGCACAGAACACTTTGAATACTGCTTGTTGTTTGACGCCTTGCAACGACACA
GAGGCAGACTCAAAGAGGTTCAACTAGAATTACAAGTGTCGCGCAAAACCTTGTATGACAAACTAAAAAAACATCAGTTG
GACAAAACACAGTTCAAGGCATAG

Upstream 100 bases:

>100_bases
GCTTTCAGTGATATGGATACGCAATCCCAGCACTCAGGCGGCATGACCTTTATTGTCAGCGTGCCTTTAGTCCCACTTCA
TCCTGCAGAGGAACACTCTC

Downstream 100 bases:

>100_bases
TAAACAAAGGGATGCTTACCCTTTCACACATTTTTATTAACCGAGCATGCTGACATGCTCGGTTAATAATAATAAGATCA
AAAAGATAAACCGTCTTTAT

Product: nitrogen regulation protein NtrX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MHNPVFFVDDEPHIRDAVTQALLIEGIDVTCFPNAVEALQQIDPSAPALIITDIHMPVMNGLEFMRTLLGKNSHFQFIVL
TGHGDVKTAVEAMKSGAYDFLEKPFSTEQLLKSLNNAGDKLALLQENVWLKKELDMQTHVGPKMIGHSQAMVDIRRTLIS
TPLHQPLIFVGEDGTGRRLAAQFAHDIHASPENELFIASGEDLYELSLDALDKAVHHLTDGKSHCSLYLHSAEHISTKQW
QCLFEHPKLQRVFGAANTVDKGIESSVKMIRMPSLNERKEDIGPLYKHFVRHAASRYQLQPPQISLDEVKRVTELDWPEN
IKQLRQFAELRALKPDVFRMEDWSSEKSIEIQSMTQRTEHFEYCLLFDALQRHRGRLKEVQLELQVSRKTLYDKLKKHQL
DKTQFKA

Sequences:

>Translated_407_residues
MHNPVFFVDDEPHIRDAVTQALLIEGIDVTCFPNAVEALQQIDPSAPALIITDIHMPVMNGLEFMRTLLGKNSHFQFIVL
TGHGDVKTAVEAMKSGAYDFLEKPFSTEQLLKSLNNAGDKLALLQENVWLKKELDMQTHVGPKMIGHSQAMVDIRRTLIS
TPLHQPLIFVGEDGTGRRLAAQFAHDIHASPENELFIASGEDLYELSLDALDKAVHHLTDGKSHCSLYLHSAEHISTKQW
QCLFEHPKLQRVFGAANTVDKGIESSVKMIRMPSLNERKEDIGPLYKHFVRHAASRYQLQPPQISLDEVKRVTELDWPEN
IKQLRQFAELRALKPDVFRMEDWSSEKSIEIQSMTQRTEHFEYCLLFDALQRHRGRLKEVQLELQVSRKTLYDKLKKHQL
DKTQFKA
>Mature_407_residues
MHNPVFFVDDEPHIRDAVTQALLIEGIDVTCFPNAVEALQQIDPSAPALIITDIHMPVMNGLEFMRTLLGKNSHFQFIVL
TGHGDVKTAVEAMKSGAYDFLEKPFSTEQLLKSLNNAGDKLALLQENVWLKKELDMQTHVGPKMIGHSQAMVDIRRTLIS
TPLHQPLIFVGEDGTGRRLAAQFAHDIHASPENELFIASGEDLYELSLDALDKAVHHLTDGKSHCSLYLHSAEHISTKQW
QCLFEHPKLQRVFGAANTVDKGIESSVKMIRMPSLNERKEDIGPLYKHFVRHAASRYQLQPPQISLDEVKRVTELDWPEN
IKQLRQFAELRALKPDVFRMEDWSSEKSIEIQSMTQRTEHFEYCLLFDALQRHRGRLKEVQLELQVSRKTLYDKLKKHQL
DKTQFKA

Specific function: Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. When activated by dctB acts in conjunction with sigma-54 to activate the transcription of dctA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=456, Percent_Identity=23.4649122807018, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1790299, Length=365, Percent_Identity=26.3013698630137, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788905, Length=460, Percent_Identity=23.9130434782609, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1790437, Length=446, Percent_Identity=25.5605381165919, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 46583; Mature: 46583

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNPVFFVDDEPHIRDAVTQALLIEGIDVTCFPNAVEALQQIDPSAPALIITDIHMPVMN
CCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCEEEEEECHHHHHH
GLEFMRTLLGKNSHFQFIVLTGHGDVKTAVEAMKSGAYDFLEKPFSTEQLLKSLNNAGDK
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCE
LALLQENVWLKKELDMQTHVGPKMIGHSQAMVDIRRTLISTPLHQPLIFVGEDGTGRRLA
EEHHHHCCCHHHHCCHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
AQFAHDIHASPENELFIASGEDLYELSLDALDKAVHHLTDGKSHCSLYLHSAEHISTKQW
HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCHHH
QCLFEHPKLQRVFGAANTVDKGIESSVKMIRMPSLNERKEDIGPLYKHFVRHAASRYQLQ
HHHHCCCHHHHHHCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PPQISLDEVKRVTELDWPENIKQLRQFAELRALKPDVFRMEDWSSEKSIEIQSMTQRTEH
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHH
FEYCLLFDALQRHRGRLKEVQLELQVSRKTLYDKLKKHQLDKTQFKA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MHNPVFFVDDEPHIRDAVTQALLIEGIDVTCFPNAVEALQQIDPSAPALIITDIHMPVMN
CCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCEEEEEECHHHHHH
GLEFMRTLLGKNSHFQFIVLTGHGDVKTAVEAMKSGAYDFLEKPFSTEQLLKSLNNAGDK
HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCCCE
LALLQENVWLKKELDMQTHVGPKMIGHSQAMVDIRRTLISTPLHQPLIFVGEDGTGRRLA
EEHHHHCCCHHHHCCHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
AQFAHDIHASPENELFIASGEDLYELSLDALDKAVHHLTDGKSHCSLYLHSAEHISTKQW
HHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCHHH
QCLFEHPKLQRVFGAANTVDKGIESSVKMIRMPSLNERKEDIGPLYKHFVRHAASRYQLQ
HHHHCCCHHHHHHCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PPQISLDEVKRVTELDWPENIKQLRQFAELRALKPDVFRMEDWSSEKSIEIQSMTQRTEH
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHH
FEYCLLFDALQRHRGRLKEVQLELQVSRKTLYDKLKKHQLDKTQFKA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2134335; 2793824; 11481431 [H]