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The map label for this gene is ybiA [H]

Identifier: 156978236

GI number: 156978236

Start: 2115855

End: 2116349

Strand: Reverse

Name: ybiA [H]

Synonym: VIBHAR_07041

Alternate gene names: 156978236

Gene position: 2116349-2115855 (Counterclockwise)

Preceding gene: 156978237

Following gene: 156978235

Centisome position: 96.02

GC content: 45.45

Gene sequence:

>495_bases
ATGGTTGATCAGATCCTTTTCTACGAACCCGATGAATCCTACGGCTTCCTCTCCAATTTTTGTCAAGCTCCCATCAAAGT
CTCTACCCAATCTTGGCCCACTAGCGAACACTATTACCAAGCTCAAAAATTCAGTGACCTCAAACTGCAAAACAAAATCC
TCTTAGCCAAAAGCCCCGACGAAGCCTTTTCTTTAAGCCGCAAATATCAGCACCTAGTAAGAGATAATTGGGATGACGAC
AAACTCTCCGTGATGGCGTTTATCGTTCGTGAGAAGTTTCTGCAAAACCCTCAGCTTGCGAAACAGTTGATGCAGACTGG
CAACGCGTGGCTTACCGAACATTCGCACAAAGATGCATTCTGGGGCGATGGGGGGGACGGTTCTGGAGAAAACCATTTAG
GAGAGATTTTGATGAACGTACGTGCAGAGCTAAAGCATGTAAAGCCATATAACTTGGTGCGTTTTGTCGATAAAGCCAAA
CTACCTACCCAATGA

Upstream 100 bases:

>100_bases
TAACCCATTGTTTGACTTTCTTATCCTGCGTTACTAAACATTATATCGATAGCGATATGCTTTTTGTTGACTATTCAATA
GCAACGTCAGGAGTACGATT

Downstream 100 bases:

>100_bases
GGCATGTTTATCATGCATGGTTTTATCGAGAACGCGACAGGAAAAGAGCACTTAGCGCTTGTGTATGGTGACCTAGCCAG
AAATGAAGCCCCGTTGATTC

Product: hypothetical protein

Products: formate; 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; diphosphate

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MVDQILFYEPDESYGFLSNFCQAPIKVSTQSWPTSEHYYQAQKFSDLKLQNKILLAKSPDEAFSLSRKYQHLVRDNWDDD
KLSVMAFIVREKFLQNPQLAKQLMQTGNAWLTEHSHKDAFWGDGGDGSGENHLGEILMNVRAELKHVKPYNLVRFVDKAK
LPTQ

Sequences:

>Translated_164_residues
MVDQILFYEPDESYGFLSNFCQAPIKVSTQSWPTSEHYYQAQKFSDLKLQNKILLAKSPDEAFSLSRKYQHLVRDNWDDD
KLSVMAFIVREKFLQNPQLAKQLMQTGNAWLTEHSHKDAFWGDGGDGSGENHLGEILMNVRAELKHVKPYNLVRFVDKAK
LPTQ
>Mature_164_residues
MVDQILFYEPDESYGFLSNFCQAPIKVSTQSWPTSEHYYQAQKFSDLKLQNKILLAKSPDEAFSLSRKYQHLVRDNWDDD
KLSVMAFIVREKFLQNPQLAKQLMQTGNAWLTEHSHKDAFWGDGGDGSGENHLGEILMNVRAELKHVKPYNLVRFVDKAK
LPTQ

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=145, Percent_Identity=45.5172413793103, Blast_Score=127, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: 3.5.4.25

Molecular weight: Translated: 18979; Mature: 18979

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDQILFYEPDESYGFLSNFCQAPIKVSTQSWPTSEHYYQAQKFSDLKLQNKILLAKSPD
CCCCEEEECCCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCH
EAFSLSRKYQHLVRDNWDDDKLSVMAFIVREKFLQNPQLAKQLMQTGNAWLTEHSHKDAF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCCCCCC
WGDGGDGSGENHLGEILMNVRAELKHVKPYNLVRFVDKAKLPTQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVDQILFYEPDESYGFLSNFCQAPIKVSTQSWPTSEHYYQAQKFSDLKLQNKILLAKSPD
CCCCEEEECCCCCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCH
EAFSLSRKYQHLVRDNWDDDKLSVMAFIVREKFLQNPQLAKQLMQTGNAWLTEHSHKDAF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCCCCCC
WGDGGDGSGENHLGEILMNVRAELKHVKPYNLVRFVDKAKLPTQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GTP; H2O

Specific reaction: GTP + 3 H2O = formate + 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine + diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]