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The map label for this gene is ypdB [C]

Identifier: 156978219

GI number: 156978219

Start: 2099997

End: 2100788

Strand: Reverse

Name: ypdB [C]

Synonym: VIBHAR_07024

Alternate gene names: 156978219

Gene position: 2100788-2099997 (Counterclockwise)

Preceding gene: 156978220

Following gene: 156978215

Centisome position: 95.32

GC content: 45.08

Gene sequence:

>792_bases
ATGAATACTGGGTTTACTGCGATTATTGCTGATGATGAACCGTTATTGAGGCGTCATCTAGATAAAAGCCTAGCTGAAGT
GTGGCCTGAGCTAGAGGTGATAGCCAAAGTCGCGGATGGTGAACAAGCGTTGCAGGCCATTGAGCAAAGCCAACCTGACA
TTGCGTTTCTTGATATTCGTATGCCAGTTTTGGATGGTATGACATTAGCGCAAAAACTCAATCAACTCGCCAACCCACCT
TTGATTGTATTTGTCACTGCGTACGATGATTACGCCATCAAAGCCTTTGAACAAAATGCCGCCGATTATTTGCTCAAGCC
TATCTCGGATGAGCGCCTCCTGACAACGTGTGAAAGAGTGAAAGCACGCCTTGCTAAGCGAGAGCAAGAAAGCAGCAATG
TGCAGATGAGCAGCCTGTTAGAACAGTTGCAGCAATTATCCGCGCCACAAACGCCGCAGTATTTACAGTGGATCAAAGCG
ACGCAAGGGGAAGATATTCATCTGATCGCCACATCTGATGTGTTGTATTTCAAAGCGGAAGAAAAATACGTTTCTGTATA
TGCGCAGCAAGGACAAGGCAAAGTACAAGAGTATTTGATTCGCACATCGTTGAAAGAGTTGATAGGGCAGCTTAACCCAG
AACAGTTCTGGCAAGTGCACCGTTCAAGCGTGGTGCAAGTATGTAAAATTAACAAAGTAAACAAAGACTTTGCTGGCAGA
ATGTTTGTTCACGTTGGAGAAAACAAGCTCCCTGTGAGCCGTGCATCTCAAAGTTTGTTCAAAGGGATGTAA

Upstream 100 bases:

>100_bases
TTTTTAGGTAAGGGAGAGGTCTCCATTAGTGAGTCTGCTCAAGGTGGCGTTTGTATTCGCTTGAGTTGGCCAATTGAATC
GTGATTAGGGAAAGATATAA

Downstream 100 bases:

>100_bases
TCGCTAGAACTGCTCACTCTTTACACTGTAAACTCGCTGCTCATTTTTTCAGCAATAAAAACAAAAAGCGCCTAGGTCAT
AAGACATTAGGCGCTTTCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNTGFTAIIADDEPLLRRHLDKSLAEVWPELEVIAKVADGEQALQAIEQSQPDIAFLDIRMPVLDGMTLAQKLNQLANPP
LIVFVTAYDDYAIKAFEQNAADYLLKPISDERLLTTCERVKARLAKREQESSNVQMSSLLEQLQQLSAPQTPQYLQWIKA
TQGEDIHLIATSDVLYFKAEEKYVSVYAQQGQGKVQEYLIRTSLKELIGQLNPEQFWQVHRSSVVQVCKINKVNKDFAGR
MFVHVGENKLPVSRASQSLFKGM

Sequences:

>Translated_263_residues
MNTGFTAIIADDEPLLRRHLDKSLAEVWPELEVIAKVADGEQALQAIEQSQPDIAFLDIRMPVLDGMTLAQKLNQLANPP
LIVFVTAYDDYAIKAFEQNAADYLLKPISDERLLTTCERVKARLAKREQESSNVQMSSLLEQLQQLSAPQTPQYLQWIKA
TQGEDIHLIATSDVLYFKAEEKYVSVYAQQGQGKVQEYLIRTSLKELIGQLNPEQFWQVHRSSVVQVCKINKVNKDFAGR
MFVHVGENKLPVSRASQSLFKGM
>Mature_263_residues
MNTGFTAIIADDEPLLRRHLDKSLAEVWPELEVIAKVADGEQALQAIEQSQPDIAFLDIRMPVLDGMTLAQKLNQLANPP
LIVFVTAYDDYAIKAFEQNAADYLLKPISDERLLTTCERVKARLAKREQESSNVQMSSLLEQLQQLSAPQTPQYLQWIKA
TQGEDIHLIATSDVLYFKAEEKYVSVYAQQGQGKVQEYLIRTSLKELIGQLNPEQFWQVHRSSVVQVCKINKVNKDFAGR
MFVHVGENKLPVSRASQSLFKGM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=259, Percent_Identity=28.1853281853282, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082052, Length=196, Percent_Identity=35.2040816326531, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790299, Length=133, Percent_Identity=30.0751879699248, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29764; Mature: 29764

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGFTAIIADDEPLLRRHLDKSLAEVWPELEVIAKVADGEQALQAIEQSQPDIAFLDIR
CCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEE
MPVLDGMTLAQKLNQLANPPLIVFVTAYDDYAIKAFEQNAADYLLKPISDERLLTTCERV
HHHHCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KARLAKREQESSNVQMSSLLEQLQQLSAPQTPQYLQWIKATQGEDIHLIATSDVLYFKAE
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCEEEEECC
EKYVSVYAQQGQGKVQEYLIRTSLKELIGQLNPEQFWQVHRSSVVQVCKINKVNKDFAGR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE
MFVHVGENKLPVSRASQSLFKGM
EEEEECCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNTGFTAIIADDEPLLRRHLDKSLAEVWPELEVIAKVADGEQALQAIEQSQPDIAFLDIR
CCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEE
MPVLDGMTLAQKLNQLANPPLIVFVTAYDDYAIKAFEQNAADYLLKPISDERLLTTCERV
HHHHCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
KARLAKREQESSNVQMSSLLEQLQQLSAPQTPQYLQWIKATQGEDIHLIATSDVLYFKAE
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCEEEEECC
EKYVSVYAQQGQGKVQEYLIRTSLKELIGQLNPEQFWQVHRSSVVQVCKINKVNKDFAGR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE
MFVHVGENKLPVSRASQSLFKGM
EEEEECCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]