| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
Click here to switch to the map view.
The map label for this gene is 156978154
Identifier: 156978154
GI number: 156978154
Start: 2052795
End: 2053709
Strand: Reverse
Name: 156978154
Synonym: VIBHAR_06959
Alternate gene names: NA
Gene position: 2053709-2052795 (Counterclockwise)
Preceding gene: 156978155
Following gene: 156978153
Centisome position: 93.18
GC content: 42.84
Gene sequence:
>915_bases ATGAAATCTAAAGATGATATAGAGCTAGCATCCTCTATCGCATCTCAGTGCGAAGAAATAGCTGTTATACCTGGCTCTGC ACAAATAACACCTATTATTATTTATGGTAAGCGCCATATTAAAAAAGAAAAACTTGTCGAATTTAACAGTGCGTACCAAG TTTTTTCTAAGTCAACTTACAAAGAGAACCCTGACATAAAGGCAATATTTGCCTTCCCAGACATAGAGGATCCATTTGCA TACCGGCATATCGTATGGGGGCGAAATGCTGATGCTCTTAACGATTACTTGTCTCGCCCTACTAACGGAGACCCCTTGTG GGATATGTATGATTGCTCACCTGAGAGACCAGATATTTTAACTGTTTACGGCGGGTGGGATGAGGAGATTAAAACGAAAG CTCAAGCAGTTTCCGGCATACACTACGAGTTTAAAAAATGTATTGCTGGCTTCATCAAGCCTGATGGTGGTAAAGAAGAA GGTCCCCCACTGTTTGGTTTCACTATGCGTTATGTGAAACCAGGGCGAATACAAGATCTAGGCACCTCATTCCAGACTGT ATGCGATATGTGGTATGAAAAGATCCCAGGTATTTTGATGGCTGCCGTCTTTCCTGATGAGAATATACCGAATTTGGTTC ATGATTTGAGAATATTTGCTAACCACAGCGCATTTTTAGCGCATGTAGACAAATCAGATAAAGACTTAACGGAAGCTATG GGAGTTTGGTTTGAAAATTACGACACAAGCGTCCCTTTCTCAGGTCAGCTTTACGCCGCCAACACTAAAGATGATGCACT ACATACAAGCTCGATCAAGTCCCGTTCAACGCCGCGAGCCCAGCTTGAGACGTTCCATTTTGGGGAGTCTGGTATGTTGG GCCAGATGCCAAATATGACTAGAAACGACTCGTGA
Upstream 100 bases:
>100_bases TTTATCCAGCTTATGATAAGAAACACTAGTTCTACGTGAACAAAAATGAAACCTCAACTATTAATCATAGGTAGTTGAGG TAACGAAGTTAGGAGAAAGT
Downstream 100 bases:
>100_bases ACAATCGAGTCTAATAATTCGAAATACCAGGCCAATGTTACGGCGTTTAATGCCTCTACATTGGCAGGTGCGCAATGCAT TAACCATAGTATTTCCTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTYKENPDIKAIFAFPDIEDPFA YRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDILTVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEE GPPLFGFTMRYVKPGRIQDLGTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMTRNDS
Sequences:
>Translated_304_residues MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTYKENPDIKAIFAFPDIEDPFA YRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDILTVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEE GPPLFGFTMRYVKPGRIQDLGTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMTRNDS >Mature_304_residues MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTYKENPDIKAIFAFPDIEDPFA YRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDILTVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEE GPPLFGFTMRYVKPGRIQDLGTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMTRNDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34229; Mature: 34229
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTY CCCCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHCC KENPDIKAIFAFPDIEDPFAYRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDIL CCCCCEEEEEECCCCCCCHHHEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEE TVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEEGPPLFGFTMRYVKPGRIQDL EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCHHHH GTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMT HHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCC RNDS CCCC >Mature Secondary Structure MKSKDDIELASSIASQCEEIAVIPGSAQITPIIIYGKRHIKKEKLVEFNSAYQVFSKSTY CCCCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCHHCCHHHHHHHHHHHHHHHHHCC KENPDIKAIFAFPDIEDPFAYRHIVWGRNADALNDYLSRPTNGDPLWDMYDCSPERPDIL CCCCCEEEEEECCCCCCCHHHEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEE TVYGGWDEEIKTKAQAVSGIHYEFKKCIAGFIKPDGGKEEGPPLFGFTMRYVKPGRIQDL EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHCCCCCHHHH GTSFQTVCDMWYEKIPGILMAAVFPDENIPNLVHDLRIFANHSAFLAHVDKSDKDLTEAM CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH GVWFENYDTSVPFSGQLYAANTKDDALHTSSIKSRSTPRAQLETFHFGESGMLGQMPNMT HHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCC RNDS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA