Click here to switch to the map view.

The map label for this gene is yjiR [H]

Identifier: 156978054

GI number: 156978054

Start: 1967256

End: 1968692

Strand: Direct

Name: yjiR [H]

Synonym: VIBHAR_06858

Alternate gene names: 156978054

Gene position: 1967256-1968692 (Clockwise)

Preceding gene: 156978052

Following gene: 156978055

Centisome position: 89.26

GC content: 48.23

Gene sequence:

>1437_bases
ATGGGTACAGATTTAGCAAGTACACTTGATGCCAATAAGTATTTGATCGTCGAGAAACATCTCAAACAAGCGATCAGCAA
TGGGGTTTATCAGCCAAACGACAAGTTGCCATCCATCCGTCAATTGAGCACTGAACTCAAGCTAAGCAAGAACACAGTGA
TCCGCGCTTATCAGGAACTAGAAGCACAAAGCATGGTTTACTCGGTGCCAAAATCCGGTTATCGAGTAAAACCAACCGAG
CGACATGAAGCCAAGATTGCTAAGCCTGCGCGCGTGGATTTGCTCTCGGTATGCAAACAAATCCTCACCCACCCCGAGTA
TCAAGAGCTGCTTCCGACGGGCTCAGCACACCCGAACATTGACGCGCCAGCCATCAAAAGCCTGTATGCCGAAATTGGCC
GCCAGAGTCGCCAACAGAGTCATATTTCCAGCCATTATCAACTGCCACCGGGTGATGACTTTTTAGTCAAACAGCTGGCG
AAGATCACCCAAGATCTGGGAACGCCGGCAAACGTGGATGATCTTTTGGTCACCCATGGTGCACAGCAAGCGATCAGTCT
TGCCCTTAGAGCAACCACACAGACTGGAGATATTGTGGCAGTGGAATCGCCCTGCTATTTCGGTAACTTGTTGATGCTCG
AATCCCTCGGTTTACAGGTGGTCGAGATCCCTAGTTGTCCTCGTGATGGTATGGATCCAGACGCGCTAGAAAAAGCCATG
GCGACGTGGGAGATCAAAGTCATTATTGTCACGCCAAACTTCACCAACCCAACAGGCTCAATGATGCCCCTTGAAAGACG
TGAGCAACTGCTTAAGGTTTCTGGAGATATTCCAATCATTGAAGATGACGTGTTTGGTGCGTTGAGTTACGACAAACCCT
TGCCAAGCTTACGCAAATTAGACGAGAAGCAACGAGTGATTTACGTCAACTCGTTATCGAAAACGCTCGATTCACGCCTT
CGTATTGGTTGGATGTTGGCGGGACGTTATCGCGCTCAAGTCGAGCAATACCTGTTATGTGAAAACATGGGCAGTTTGAA
CTTGATGCAATCGGCAGTAGGCACTTTTCTAACCTCAGGCAAATACCGCACTCACACTGCGCGTATGTGCCGTGTTTACC
AAGCCAACGTGAGACGATATTTGCAGATGCTCAATCAATGCTTAGATGCACACTTTGAACTAAAAAACCGCTACCAAATC
AATGCAGTACAAGGCTCATTCTTGCTTTGGTTACGCTTGCCACCCAAGACTGACAGCTATGCGCTTTATCAAGCCTGTAA
CGAACACAAAATCAGTATTCTGCCCGGCTCGGTATTTGGCACTCAGGGACAGTATCAAAACTGCATTCGTCTTAGCGTGG
CGAACTTTGGAGCGGAGAAAAACTGGTTCCCTGCGATGGAAACGCTGGCAGCACTGATTTCTCAGCACGTTAAATAG

Upstream 100 bases:

>100_bases
CACTCTACTTATTTTTAAATCTTGAATGTTTTTAAATCTCGAATGTTGCTAATGTAGTTAGGTACAGTGTTTTAAAAAAG
TGACAGATGGAAATGTTTTT

Downstream 100 bases:

>100_bases
TCGCTCCAGACATTCCGTTCCAAGCATTCAGCACCGATACAACAAAGCCTCAGTAATTGGGCTGTCTCCTATACACAAAT
CCCCAAGCCTATGGCTTGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MGTDLASTLDANKYLIVEKHLKQAISNGVYQPNDKLPSIRQLSTELKLSKNTVIRAYQELEAQSMVYSVPKSGYRVKPTE
RHEAKIAKPARVDLLSVCKQILTHPEYQELLPTGSAHPNIDAPAIKSLYAEIGRQSRQQSHISSHYQLPPGDDFLVKQLA
KITQDLGTPANVDDLLVTHGAQQAISLALRATTQTGDIVAVESPCYFGNLLMLESLGLQVVEIPSCPRDGMDPDALEKAM
ATWEIKVIIVTPNFTNPTGSMMPLERREQLLKVSGDIPIIEDDVFGALSYDKPLPSLRKLDEKQRVIYVNSLSKTLDSRL
RIGWMLAGRYRAQVEQYLLCENMGSLNLMQSAVGTFLTSGKYRTHTARMCRVYQANVRRYLQMLNQCLDAHFELKNRYQI
NAVQGSFLLWLRLPPKTDSYALYQACNEHKISILPGSVFGTQGQYQNCIRLSVANFGAEKNWFPAMETLAALISQHVK

Sequences:

>Translated_478_residues
MGTDLASTLDANKYLIVEKHLKQAISNGVYQPNDKLPSIRQLSTELKLSKNTVIRAYQELEAQSMVYSVPKSGYRVKPTE
RHEAKIAKPARVDLLSVCKQILTHPEYQELLPTGSAHPNIDAPAIKSLYAEIGRQSRQQSHISSHYQLPPGDDFLVKQLA
KITQDLGTPANVDDLLVTHGAQQAISLALRATTQTGDIVAVESPCYFGNLLMLESLGLQVVEIPSCPRDGMDPDALEKAM
ATWEIKVIIVTPNFTNPTGSMMPLERREQLLKVSGDIPIIEDDVFGALSYDKPLPSLRKLDEKQRVIYVNSLSKTLDSRL
RIGWMLAGRYRAQVEQYLLCENMGSLNLMQSAVGTFLTSGKYRTHTARMCRVYQANVRRYLQMLNQCLDAHFELKNRYQI
NAVQGSFLLWLRLPPKTDSYALYQACNEHKISILPGSVFGTQGQYQNCIRLSVANFGAEKNWFPAMETLAALISQHVK
>Mature_477_residues
GTDLASTLDANKYLIVEKHLKQAISNGVYQPNDKLPSIRQLSTELKLSKNTVIRAYQELEAQSMVYSVPKSGYRVKPTER
HEAKIAKPARVDLLSVCKQILTHPEYQELLPTGSAHPNIDAPAIKSLYAEIGRQSRQQSHISSHYQLPPGDDFLVKQLAK
ITQDLGTPANVDDLLVTHGAQQAISLALRATTQTGDIVAVESPCYFGNLLMLESLGLQVVEIPSCPRDGMDPDALEKAMA
TWEIKVIIVTPNFTNPTGSMMPLERREQLLKVSGDIPIIEDDVFGALSYDKPLPSLRKLDEKQRVIYVNSLSKTLDSRLR
IGWMLAGRYRAQVEQYLLCENMGSLNLMQSAVGTFLTSGKYRTHTARMCRVYQANVRRYLQMLNQCLDAHFELKNRYQIN
AVQGSFLLWLRLPPKTDSYALYQACNEHKISILPGSVFGTQGQYQNCIRLSVANFGAEKNWFPAMETLAALISQHVK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=287, Percent_Identity=25.7839721254355, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI33469970, Length=287, Percent_Identity=25.7839721254355, Blast_Score=86, Evalue=7e-17,
Organism=Escherichia coli, GI1790797, Length=443, Percent_Identity=33.6343115124154, Blast_Score=268, Evalue=5e-73,
Organism=Escherichia coli, GI1787710, Length=475, Percent_Identity=29.2631578947368, Blast_Score=209, Evalue=3e-55,
Organism=Saccharomyces cerevisiae, GI6321236, Length=184, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53566; Mature: 53435

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTDLASTLDANKYLIVEKHLKQAISNGVYQPNDKLPSIRQLSTELKLSKNTVIRAYQEL
CCCCHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EAQSMVYSVPKSGYRVKPTERHEAKIAKPARVDLLSVCKQILTHPEYQELLPTGSAHPNI
HHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
DAPAIKSLYAEIGRQSRQQSHISSHYQLPPGDDFLVKQLAKITQDLGTPANVDDLLVTHG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCC
AQQAISLALRATTQTGDIVAVESPCYFGNLLMLESLGLQVVEIPSCPRDGMDPDALEKAM
HHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
ATWEIKVIIVTPNFTNPTGSMMPLERREQLLKVSGDIPIIEDDVFGALSYDKPLPSLRKL
HEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHC
DEKQRVIYVNSLSKTLDSRLRIGWMLAGRYRAQVEQYLLCENMGSLNLMQSAVGTFLTSG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
KYRTHTARMCRVYQANVRRYLQMLNQCLDAHFELKNRYQINAVQGSFLLWLRLPPKTDSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCCCCH
ALYQACNEHKISILPGSVFGTQGQYQNCIRLSVANFGAEKNWFPAMETLAALISQHVK
HHHHHCCCCEEEEECCCCCCCCCCHHHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GTDLASTLDANKYLIVEKHLKQAISNGVYQPNDKLPSIRQLSTELKLSKNTVIRAYQEL
CCCHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EAQSMVYSVPKSGYRVKPTERHEAKIAKPARVDLLSVCKQILTHPEYQELLPTGSAHPNI
HHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
DAPAIKSLYAEIGRQSRQQSHISSHYQLPPGDDFLVKQLAKITQDLGTPANVDDLLVTHG
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCC
AQQAISLALRATTQTGDIVAVESPCYFGNLLMLESLGLQVVEIPSCPRDGMDPDALEKAM
HHHHHHHHHHEECCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHH
ATWEIKVIIVTPNFTNPTGSMMPLERREQLLKVSGDIPIIEDDVFGALSYDKPLPSLRKL
HEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHC
DEKQRVIYVNSLSKTLDSRLRIGWMLAGRYRAQVEQYLLCENMGSLNLMQSAVGTFLTSG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
KYRTHTARMCRVYQANVRRYLQMLNQCLDAHFELKNRYQINAVQGSFLLWLRLPPKTDSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCCCCH
ALYQACNEHKISILPGSVFGTQGQYQNCIRLSVANFGAEKNWFPAMETLAALISQHVK
HHHHHCCCCEEEEECCCCCCCCCCHHHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]