Click here to switch to the map view.

The map label for this gene is fis [C]

Identifier: 156978017

GI number: 156978017

Start: 1931417

End: 1931659

Strand: Reverse

Name: fis [C]

Synonym: VIBHAR_06814

Alternate gene names: 156978017

Gene position: 1931659-1931417 (Counterclockwise)

Preceding gene: 156978018

Following gene: 156978016

Centisome position: 87.64

GC content: 46.91

Gene sequence:

>243_bases
ATGACGACCTTGATAACGCGGGATGAGGTGGTTCAATGTGTGAAACAAGAGCTTGAATTGACAGGCATTGCAGATAAAAA
GCATGCAGCGCCCGATCTCAGCCAATTACTACCAGAAGTGAAGTGCACGATTGTCGAAGTGCTCTTGCTGCATACCCGAG
GCAATCAGGCTCAGGCCGCACGAATGCTTGGAATGAATCGTGCTACATTGCGAAAGATATATAAACAAAGCCTTAAGCGA
TGA

Upstream 100 bases:

>100_bases
ACATTGGTAATTCTGGTTTGCCCTACAAAACCCAACAAGGGCGCTTAGTCGCACATTGCTATACATCGCTCAAAGAAGAA
AAAAGTAAGAGGAAAAAAGT

Downstream 100 bases:

>100_bases
ATGCTATCTATTAGCAAGAAGCGGCTTTTGCAAATCCTGCCAATCGCTGCATTAGAATGGTACAAAAGCCGCCAAAGAGA
ACAAAACGTCCTCTATTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MTTLITRDEVVQCVKQELELTGIADKKHAAPDLSQLLPEVKCTIVEVLLLHTRGNQAQAARMLGMNRATLRKIYKQSLKR

Sequences:

>Translated_80_residues
MTTLITRDEVVQCVKQELELTGIADKKHAAPDLSQLLPEVKCTIVEVLLLHTRGNQAQAARMLGMNRATLRKIYKQSLKR
>Mature_79_residues
TTLITRDEVVQCVKQELELTGIADKKHAAPDLSQLLPEVKCTIVEVLLLHTRGNQAQAARMLGMNRATLRKIYKQSLKR

Specific function: Activates Ribosomal RNA Transcription. Plays A Direct Role In Upstream Activation Of rRNA Promoters. Binds To A Recombinational Enhancer Sequence That Is Required To Stimulate Hin-Mediated DNA Inversion. Prevents Initiation Of DNA Replication From Oric.

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9028; Mature: 8897

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLITRDEVVQCVKQELELTGIADKKHAAPDLSQLLPEVKCTIVEVLLLHTRGNQAQAA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RMLGMNRATLRKIYKQSLKR
HHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTLITRDEVVQCVKQELELTGIADKKHAAPDLSQLLPEVKCTIVEVLLLHTRGNQAQAA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RMLGMNRATLRKIYKQSLKR
HHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA