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The map label for this gene is ykfC [C]

Identifier: 156977974

GI number: 156977974

Start: 1899159

End: 1899851

Strand: Reverse

Name: ykfC [C]

Synonym: VIBHAR_06770

Alternate gene names: 156977974

Gene position: 1899851-1899159 (Counterclockwise)

Preceding gene: 156977981

Following gene: 156977973

Centisome position: 86.2

GC content: 49.64

Gene sequence:

>693_bases
ATGGAACAAATCTGCTCCTCAACCAACCTGAATCAAGCTTTACGAAGAGTGAAGAAGAACAAGGGATGTGCAGGTGTCGA
CAAACTCGACATAGATGCAACTATCTTTAAGCTTCGACAAGCTTCAAACGGGCAAGCGCTTCGCCAGAGTCTTCTGGATG
GAAGCTACCGACCTCAACCCGTTCTTGGTGTGGGAATCCCCAAACCGAGTGGTGGCGTCAGACAACTAGGTATCCCAACA
GTGCTCGATAGAATTGTCCAACAGGCAATCACGCGAGTGCGGCAGATAACGAAGCGAAACCGAGGTCGAGAGTTAAAGGT
GGTAATCGCCGAGTTAACTCAATACCTAAGAGGTTGGCAAGACTACTTCAAACTCGCCATACGGAAGAGCAGCATGAAGC
GCTTGGACGAATGGATACGGCGACGGCTAAGATGCTATCGACTTAAGCAACGCAAACACAGATACGGCATAGCGACATGG
TTACAGCGACAAGGTGTAACAGAGCGTAATGCGTGGAAGTTAGCGATGTCAGATAAAGGTTGGTGGCGGCTAGCATTAAC
GCCCCAGACAAATCACGCTATGCCAACAAAATGGTTCGAGGAGTTGGGTCTGTACTCGTTGCGAGATGGGTATGAGTCAC
TAAAAGTATATTCGGAACCGCCGTATGCGACCCACGCTTGTACGGTGGTGTGA

Upstream 100 bases:

>100_bases
CCCAATGGGCGATACCGCAAGTAAAGCTCACGGTGACGAAGAATGGCAAGCATGGTCGGCGTAGACAGGAGGACGAGTCT
TGGTGACCTCAACTTCGTTG

Downstream 100 bases:

>100_bases
GAGGACGGAGGCCGTGAGGCCTCCTCCTACTCGATTTTTAGTGTCTGGAAGTGAAGTGAGGCTTTACCACAACGGGAGGT
TTAAAACTGAACAGGCTGCA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Reverse Transcriptase/Maturase; Reverse Transcriptase; Group II Intron-Encoding Maturase; Reverse Transcriptase/Maturase Family Protein; GBSi1 Group II Intron Maturase; Retron-Type Reverse Transcriptase; Maturase; Retron-Type Reverse Transcriptase-Like Protein; Reverse Transcriptase/Maturase Group FT II Introns; Recombinase; Group II Intron-Encoded Protein LtrA; Reverse Transcriptase Family Protein; Maturase-Related Protein; Transposase; Ecombinase For Bh.Int; Group II Intron-Encoded Maturase; Integron/Retron-Type RNA-Directed DNA Polymerase; Group II Intron Maturase; Group II Intron-Encoded Protein; Phage Reverse Transcriptase/Maturase Protein; Group II Intron Reverse Transcriptase Maturase; Reverse Transcriptasematurase Protein; Na-Directed DNA Polymerase; Group II Intron Maturase-Specific Domain Protein

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITRVRQITKRNRGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATW
LQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV

Sequences:

>Translated_230_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITRVRQITKRNRGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATW
LQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
>Mature_230_residues
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQPVLGVGIPKPSGGVRQLGIPT
VLDRIVQQAITRVRQITKRNRGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATW
LQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26654; Mature: 26654

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQP
CCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
VLGVGIPKPSGGVRQLGIPTVLDRIVQQAITRVRQITKRNRGRELKVVIAELTQYLRGWQ
EEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
DYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
WWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
EEEEEECCCCCCCCCHHHHHHCCCHHHHCCHHHHHCCCCCCCCCCCEECC
>Mature Secondary Structure
MEQICSSTNLNQALRRVKKNKGCAGVDKLDIDATIFKLRQASNGQALRQSLLDGSYRPQP
CCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
VLGVGIPKPSGGVRQLGIPTVLDRIVQQAITRVRQITKRNRGRELKVVIAELTQYLRGWQ
EEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
DYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
WWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
EEEEEECCCCCCCCCHHHHHHCCCHHHHCCHHHHHCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA