Click here to switch to the map view.

The map label for this gene is tnpA [H]

Identifier: 156977911

GI number: 156977911

Start: 1839406

End: 1840785

Strand: Reverse

Name: tnpA [H]

Synonym: VIBHAR_06704

Alternate gene names: 156977911

Gene position: 1840785-1839406 (Counterclockwise)

Preceding gene: 156977912

Following gene: 156977910

Centisome position: 83.52

GC content: 44.2

Gene sequence:

>1380_bases
ATGACACACTCAGACGCTAAACTTTGGGCACAAGAACAATTTGGACAAGCACAACTTAAAGACCCTCGAAGAACACAACG
CCTCATCAGTTTAGCGACTTCTATTGCTAATCAACCAGGAGTCTCCGTGGCTAAACTTCCTTTTTCTCCCGCCGATATGG
AAGGTGCATATCGCTTTATCCGCAATGAAAACATCAATGCAGAAGACATCGCTGAAGCAGGTTTTCAATCAACGGTATCT
CGAGCTAACGAGCATAAGGAATTACTCGCGCTTGAAGATACAACAACGCTCAGCTTTCCGCATCGAAGTATCAAAGAAGA
ACTCGGGCATACTAATCAAGGCGATAGAACTCGAGCTCTCCACGTACATTCGACGTTACTTTTTGCACCACAAAGCCAAA
CCATTGTTGGTCTGATAGAGCAGCAACGATGGAGCCGAGATATTACCAAGCGTGGGCAAAAGCACCAACACGCGACTCGT
CCTTATAAGGAGAAAGAGAGTTACAAGTGGGAGCAAGCCTCTCGCCGTGTCGTTGAACGCCTAGGGGATAAAATGTTAGA
TGTTATCTCGGTCTGTGACCGAGAAGCTGACCTATTCGAATACTTAACTTATAAGCGTCAACATCAGCAGCGTTTTGTCG
TTCGCTCAATGCAAAGTCGTTGTCTAGAAGAGCATGCTCAAAAGCTTTACGACTATGCGCAAGCGTTACCAAGCGTCGAG
ACAAAAGCGCTTACCATCCCCCAAAAAGGAGGGAGAAAAGCGAGAAATGTAAAGCTTGATGTTAAATATGGTCAGGTGAC
ATTAAAGGCTCCGGCAAACAAAAAAGAGCACGCAGGCATACCTGTTTATTATGTTGGTTGCCTTGAGCAAGGGACATCAA
AAGACAAGTTAGCATGGCATCTCTTGACGTCGGAGCCAATAAACAACGTTGACGATGCCATGAGAATTATCGGTTATTAC
GAGCGCCGATGGCTGATTGAAGATTTCCATAAAGTCTGGAAAAGTGAAGGGACAGATGTGGAGTCACTCAGGCTACAAAG
TAAAGATAACTTAGAGAGATTAAGTGTCATCTATGCCTTTGTTGCTACGCGTTTATTGGCATTACGCTTCATGAAAGAAG
TTGATGAGCTAACGAAAGAAAGTTGTGAAAAGGTATTGGGCCAAAAAGCTTGGAAGCTACTATGGTTGAAACTAGAAAGT
AAAACGTTACCTAAAGAAGTGCCCGATATGGGTTGGGCGTACAAAAATCTCGCTAAATTAGGCGGTTGGAAAGATACCAA
AAGGACGGGTAGAGCTTCAATAAAGGTGCTTTGGGAAGGATGGTTTAAATTACAAACCATCCTTGAGGGCTACGAACTCG
CAATGTCTCTTGAACACTAG

Upstream 100 bases:

>100_bases
CTTATACACAAATCCCCAAGCTTGTAGCTTGGGGATTTTTTTTGAACTCTTTCAAGTGTGTGTGATCTGATCACTTAGCA
ATCATTACTGAAACACTAAG

Downstream 100 bases:

>100_bases
ACTTGTGATCAAGAGACAGGCCACTTCGGCGGGTTTTATTTTATTAAGCTACCGAATGAGAGGTGAGTTAAATATTGGGT
AGGTCATTGCCCGATAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: Tnp [H]

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MTHSDAKLWAQEQFGQAQLKDPRRTQRLISLATSIANQPGVSVAKLPFSPADMEGAYRFIRNENINAEDIAEAGFQSTVS
RANEHKELLALEDTTTLSFPHRSIKEELGHTNQGDRTRALHVHSTLLFAPQSQTIVGLIEQQRWSRDITKRGQKHQHATR
PYKEKESYKWEQASRRVVERLGDKMLDVISVCDREADLFEYLTYKRQHQQRFVVRSMQSRCLEEHAQKLYDYAQALPSVE
TKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDKLAWHLLTSEPINNVDDAMRIIGYY
ERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWLKLES
KTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMSLEH

Sequences:

>Translated_459_residues
MTHSDAKLWAQEQFGQAQLKDPRRTQRLISLATSIANQPGVSVAKLPFSPADMEGAYRFIRNENINAEDIAEAGFQSTVS
RANEHKELLALEDTTTLSFPHRSIKEELGHTNQGDRTRALHVHSTLLFAPQSQTIVGLIEQQRWSRDITKRGQKHQHATR
PYKEKESYKWEQASRRVVERLGDKMLDVISVCDREADLFEYLTYKRQHQQRFVVRSMQSRCLEEHAQKLYDYAQALPSVE
TKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDKLAWHLLTSEPINNVDDAMRIIGYY
ERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWLKLES
KTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMSLEH
>Mature_458_residues
THSDAKLWAQEQFGQAQLKDPRRTQRLISLATSIANQPGVSVAKLPFSPADMEGAYRFIRNENINAEDIAEAGFQSTVSR
ANEHKELLALEDTTTLSFPHRSIKEELGHTNQGDRTRALHVHSTLLFAPQSQTIVGLIEQQRWSRDITKRGQKHQHATRP
YKEKESYKWEQASRRVVERLGDKMLDVISVCDREADLFEYLTYKRQHQQRFVVRSMQSRCLEEHAQKLYDYAQALPSVET
KALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDKLAWHLLTSEPINNVDDAMRIIGYYE
RRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWLKLESK
TLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMSLEH

Specific function: Mediates transposition of transposon Tn5 by a 'cut and paste' mechanism. First, the monomeric transposase binds the 19 bp inverted DNA repeats flanking the transposon. Then, dimerization of the DNA-bound transposase creates a synaptic DNA complex. After n

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002559
- InterPro:   IPR003201
- InterPro:   IPR014737
- InterPro:   IPR014736
- InterPro:   IPR014735 [H]

Pfam domain/function: PF01609 Transposase_11; PF02281 Transposase_Tn5 [H]

EC number: NA

Molecular weight: Translated: 52981; Mature: 52850

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSDAKLWAQEQFGQAQLKDPRRTQRLISLATSIANQPGVSVAKLPFSPADMEGAYRFI
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
RNENINAEDIAEAGFQSTVSRANEHKELLALEDTTTLSFPHRSIKEELGHTNQGDRTRAL
HCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCCHHHHHHHHCCCCCCCCEEEE
HVHSTLLFAPQSQTIVGLIEQQRWSRDITKRGQKHQHATRPYKEKESYKWEQASRRVVER
EEEHEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHCCCHHHHHHHHHHH
LGDKMLDVISVCDREADLFEYLTYKRQHQQRFVVRSMQSRCLEEHAQKLYDYAQALPSVE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDKLAWH
CCEEECCCCCCCCCCCEEEEEEECEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEE
LLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAF
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHH
VATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWLKLESKTLPKEVPDMGWAYKNLAKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHH
GGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMSLEH
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
THSDAKLWAQEQFGQAQLKDPRRTQRLISLATSIANQPGVSVAKLPFSPADMEGAYRFI
CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
RNENINAEDIAEAGFQSTVSRANEHKELLALEDTTTLSFPHRSIKEELGHTNQGDRTRAL
HCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEECCCHHHHHHHHCCCCCCCCEEEE
HVHSTLLFAPQSQTIVGLIEQQRWSRDITKRGQKHQHATRPYKEKESYKWEQASRRVVER
EEEHEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHCCCHHHHHHHHHHH
LGDKMLDVISVCDREADLFEYLTYKRQHQQRFVVRSMQSRCLEEHAQKLYDYAQALPSVE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDKLAWH
CCEEECCCCCCCCCCCEEEEEEECEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEE
LLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAF
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHH
VATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWLKLESKTLPKEVPDMGWAYKNLAKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHH
GGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMSLEH
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6260374; 6271452; 7867940; 6291786; 10884228; 12367522; 11896402 [H]