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The map label for this gene is ydaM [H]

Identifier: 156977902

GI number: 156977902

Start: 1829940

End: 1830953

Strand: Direct

Name: ydaM [H]

Synonym: VIBHAR_06694

Alternate gene names: 156977902

Gene position: 1829940-1830953 (Clockwise)

Preceding gene: 156977898

Following gene: 156977904

Centisome position: 83.03

GC content: 45.27

Gene sequence:

>1014_bases
ATGACCGACGAATTTAAAAAATCAACCGCGAATCTAAAAAAAGCGGTACCACTAATGATCAAGAACCACGTAGCAGCGAC
ACCAGCAAACTACGCCTTGTGGTACACCTACGTAGACAAAACCATCCCAGAGCTTAACCAAGAGTTAGATATGGTTCTGG
AGAATTATGACGTCTGCCCACCAGCGATGCACAAGCAGCTCTACAACAGCTACGTCGCGAGTAAAGCCGAAACCAGTTTA
GAAGAACTCAAAACCAACGTAGAAGTGCTGTTGGGTGAAGTATCTAGCTCGATGAGTGACACTATTACGGATACCTCCTC
CTTCTCTGATATGGTGGACAAAAGCTTTAACAAGCTTGAAAAGGTTGAAGATAATAGCCTGAGTATTGAAGAAGTGATGA
ATGTGGTTCGTCAGCTCGTCGCGGAATCTCGTGAAATTCGTCACTCGACTCAGTTTCTAAATAGCCAACTAACAACGGCT
AGTGAAGAAATTTCTCGTCTAAAAAACCAATTGGCCGAAGTACAAAAAGACGCTCTTTTCGATGGTCTTTCCAATCTGTA
TAACCGCCGTGCTTTCGACAGTGACCTCCAAATGCTGATCGACAGCAATCAAGCAATGACCTTGGTTATGCTGGATATTG
ATCACTTCAAAGCATTTAACGACAATTACGGCCACTTGTTTGGCGATACCGTTATCAAAGCCATCGCACGTCGTCTGCAA
CAAAGCTGTCGTGATGGCATCAGCGCTTACCGCTTTGGTGGCGAAGAGTTTGCTTTGATCATACCGAATAAATCGTTGCG
CATCGGTCGTCAATACGCCGATACGTTACGCCGAATGATCGAAAAGCTGCGTGTCCGTGACAAACGTTCGGGCAGCCAAG
TGCAAAGTATTACCGCTTCTTTTGGTGTCGCAGAGTATGAAGTTGGCGATACGTTGGAAAGCTTGGTTAATAAGGCTGAT
AAACAGTTGTATGAAGCAAAACAACTGGGCCGAAACCGAGTAATGCCGCTGTAG

Upstream 100 bases:

>100_bases
TTTTTTAAGAAAACCAAACAAAAATGATAAAAAATAAAGCGATATTGTTTTATATCCGTTACCCTTAACCTAATTCCATT
TTGCTTGCCACATTGCAGAA

Downstream 100 bases:

>100_bases
AGCTTGCTCGCCAGCTCATACCGCCCCTTTTAAAAGACAAAACCCCAAGCATGTACTTGGGGTTTTGTCTTTCTTGGGCT
GGCTCGTTATTAATGATACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTDEFKKSTANLKKAVPLMIKNHVAATPANYALWYTYVDKTIPELNQELDMVLENYDVCPPAMHKQLYNSYVASKAETSL
EELKTNVEVLLGEVSSSMSDTITDTSSFSDMVDKSFNKLEKVEDNSLSIEEVMNVVRQLVAESREIRHSTQFLNSQLTTA
SEEISRLKNQLAEVQKDALFDGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ
QSCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITASFGVAEYEVGDTLESLVNKAD
KQLYEAKQLGRNRVMPL

Sequences:

>Translated_337_residues
MTDEFKKSTANLKKAVPLMIKNHVAATPANYALWYTYVDKTIPELNQELDMVLENYDVCPPAMHKQLYNSYVASKAETSL
EELKTNVEVLLGEVSSSMSDTITDTSSFSDMVDKSFNKLEKVEDNSLSIEEVMNVVRQLVAESREIRHSTQFLNSQLTTA
SEEISRLKNQLAEVQKDALFDGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ
QSCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITASFGVAEYEVGDTLESLVNKAD
KQLYEAKQLGRNRVMPL
>Mature_336_residues
TDEFKKSTANLKKAVPLMIKNHVAATPANYALWYTYVDKTIPELNQELDMVLENYDVCPPAMHKQLYNSYVASKAETSLE
ELKTNVEVLLGEVSSSMSDTITDTSSFSDMVDKSFNKLEKVEDNSLSIEEVMNVVRQLVAESREIRHSTQFLNSQLTTAS
EEISRLKNQLAEVQKDALFDGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQQ
SCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITASFGVAEYEVGDTLESLVNKADK
QLYEAKQLGRNRVMPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=36.5168539325843, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=38.150289017341, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=32.9545454545455, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=32.5, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=36.4779874213836, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787262, Length=184, Percent_Identity=32.0652173913043, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI145693134, Length=227, Percent_Identity=25.9911894273128, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=224, Percent_Identity=29.4642857142857, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=34.0782122905028, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=27.5280898876405, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=188, Percent_Identity=32.4468085106383, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=27.6729559748428, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787541, Length=160, Percent_Identity=30.625, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38227; Mature: 38096

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDEFKKSTANLKKAVPLMIKNHVAATPANYALWYTYVDKTIPELNQELDMVLENYDVCP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAMHKQLYNSYVASKAETSLEELKTNVEVLLGEVSSSMSDTITDTSSFSDMVDKSFNKLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KVEDNSLSIEEVMNVVRQLVAESREIRHSTQFLNSQLTTASEEISRLKNQLAEVQKDALF
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGLSNLYNRRAFDSDLQMLIDSNQAMTLVMLDIDHFKAFNDNYGHLFGDTVIKAIARRLQ
HHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QSCRDGISAYRFGGEEFALIIPNKSLRIGRQYADTLRRMIEKLRVRDKRSGSQVQSITAS
HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
FGVAEYEVGDTLESLVNKADKQLYEAKQLGRNRVMPL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]