Click here to switch to the map view.

The map label for this gene is yidZ [H]

Identifier: 156977845

GI number: 156977845

Start: 1773987

End: 1774625

Strand: Direct

Name: yidZ [H]

Synonym: VIBHAR_06633

Alternate gene names: 156977845

Gene position: 1773987-1774625 (Clockwise)

Preceding gene: 156977844

Following gene: 156977848

Centisome position: 80.49

GC content: 46.64

Gene sequence:

>639_bases
GTGCTGACGATTCTTGATGAGCTTCTTATCGCAATCCACCAGCGTTACCCGGATGCTAAAGTCAAAACCAGGAACTGGGA
TTACGATTCACTCGATGCGATTGTGCGTGGAGAAGCAGACATCGGCTTTACCGGAAGAGAGAGCTATCCCCGCTCGAAAG
AGTCACTCGACCTGCTCCCTTACTTCCTCGATTTTGAAGTGCTGTTCTCAGATTTACCTATGGTGTACTTGCACAAGAAT
CACCCTGCTTTGGAGCAGGCATGGAATCTTGAGACCTTTTTGAGCTATCAACACATCAACATTGTTTGGGAAAAGAGTGA
AACATGGGCTTTAGATGAAGTGTTGAGTGAACTTGGCCTACAGCGCTCTATTGGCTTAACCATGTCGAGCTTCGAGCAGT
CTCTGTTTATGGCCGCGCAACCACACCACAATATGCTGACCACCGCACCGCAATACGGTGAGAGTTACACCAAGAAACTG
CATCCAGATTTGGTATGCCTACCCATTCCATTGGAACAAACTCAACAAGATAAACTGCTGATCCCGTTCACCATGATTTG
GCACAAACGTAATGCGTACAATCCAAAACTGGTGTGGTTACGAAATACCATTAAGTCGCTTTTTTCCAGCCAATCGTGA

Upstream 100 bases:

>100_bases
TCTCTATCTATCTCGCGGGAATGGCAGCCAAATTGCGGAAAAACGCAGCGATATAGCACCAAAAGGCGTACGCTTTGATC
TGACCATTGAATCCCCGTTA

Downstream 100 bases:

>100_bases
CGAGCAACTAGCAGCTAAGTGGGGTGAAAATGTCATCCCACTTAGAGTTTCAAATTGCTCTTCAAATCAGCCGCTACTTA
TTCCACATTAACCTGCCTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MLTILDELLIAIHQRYPDAKVKTRNWDYDSLDAIVRGEADIGFTGRESYPRSKESLDLLPYFLDFEVLFSDLPMVYLHKN
HPALEQAWNLETFLSYQHINIVWEKSETWALDEVLSELGLQRSIGLTMSSFEQSLFMAAQPHHNMLTTAPQYGESYTKKL
HPDLVCLPIPLEQTQQDKLLIPFTMIWHKRNAYNPKLVWLRNTIKSLFSSQS

Sequences:

>Translated_212_residues
MLTILDELLIAIHQRYPDAKVKTRNWDYDSLDAIVRGEADIGFTGRESYPRSKESLDLLPYFLDFEVLFSDLPMVYLHKN
HPALEQAWNLETFLSYQHINIVWEKSETWALDEVLSELGLQRSIGLTMSSFEQSLFMAAQPHHNMLTTAPQYGESYTKKL
HPDLVCLPIPLEQTQQDKLLIPFTMIWHKRNAYNPKLVWLRNTIKSLFSSQS
>Mature_212_residues
MLTILDELLIAIHQRYPDAKVKTRNWDYDSLDAIVRGEADIGFTGRESYPRSKESLDLLPYFLDFEVLFSDLPMVYLHKN
HPALEQAWNLETFLSYQHINIVWEKSETWALDEVLSELGLQRSIGLTMSSFEQSLFMAAQPHHNMLTTAPQYGESYTKKL
HPDLVCLPIPLEQTQQDKLLIPFTMIWHKRNAYNPKLVWLRNTIKSLFSSQS

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=212, Percent_Identity=59.4339622641509, Blast_Score=277, Evalue=4e-76,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 24729; Mature: 24729

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTILDELLIAIHQRYPDAKVKTRNWDYDSLDAIVRGEADIGFTGRESYPRSKESLDLLP
CHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHH
YFLDFEVLFSDLPMVYLHKNHPALEQAWNLETFLSYQHINIVWEKSETWALDEVLSELGL
HHHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHEEEEEEEEEECCCCCCHHHHHHHHCC
QRSIGLTMSSFEQSLFMAAQPHHNMLTTAPQYGESYTKKLHPDLVCLPIPLEQTQQDKLL
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
IPFTMIWHKRNAYNPKLVWLRNTIKSLFSSQS
EEHHEEEECCCCCCCEEEHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTILDELLIAIHQRYPDAKVKTRNWDYDSLDAIVRGEADIGFTGRESYPRSKESLDLLP
CHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHH
YFLDFEVLFSDLPMVYLHKNHPALEQAWNLETFLSYQHINIVWEKSETWALDEVLSELGL
HHHHHHHHHHCCCEEEEECCCCHHHHHCCHHHHHEEEEEEEEEECCCCCCHHHHHHHHCC
QRSIGLTMSSFEQSLFMAAQPHHNMLTTAPQYGESYTKKLHPDLVCLPIPLEQTQQDKLL
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
IPFTMIWHKRNAYNPKLVWLRNTIKSLFSSQS
EEHHEEEECCCCCCCEEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA