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The map label for this gene is yciT [H]

Identifier: 156977795

GI number: 156977795

Start: 1730222

End: 1730962

Strand: Reverse

Name: yciT [H]

Synonym: VIBHAR_06583

Alternate gene names: 156977795

Gene position: 1730962-1730222 (Counterclockwise)

Preceding gene: 156977796

Following gene: 156977792

Centisome position: 78.54

GC content: 49.8

Gene sequence:

>741_bases
GTGAACTCAAGACAAAATGAAATCCTGCAATTGGTTAATGACCGCAAACGCGTTCAAGTGACGGAGCTTTCTGACATCAT
TGGTGTGTCGGGCGTGACCATCAGGCAGGATTTGAACTTCCTTGAGCAACAAGGCTACTTAAAGCGTGTACACGGCGCTG
CGACCGCGCTACAAAGTGACGATATTGATACGCGACTTGAAGTGCGCTTCGACATCAAACAGGCGTTAGCCAACAAAGCG
GCAGACTTGGTCTCACCAAACGAAACCGTATTGATCGAAGGCGGCAGTGCCAACGGGCTCTTGGCTCGCACGTTAGCCGA
ACGTGGTGACGTCACTATCATTACCCCATCGGCGTACATCGCTCATCTCATCCGTAACACCTCAGCTAACATCATCTTGC
TCGGTGGTGTGTATCAGCATCAAGGCGAGAGTTTGGTTGGTCCGCTGACTAAGTTGTGTATTGAGAACATTCACTTCAGC
ACGGCTTTCTTGGGTATTGACGGCTTTCATCAAGATACTGGCTTTACTAGCCGAGACATGATGCGCGCAGAAATCGCCGA
AACCATCATTGCGAAACAGCGCCGTAATATCGTGCTGACGGACTCAAGCAAGTTTGGGCAAATCTACCCATCTTCGATTG
GTAAAACGAGTGAAATCTCGGTGCTGTTAACTGACGAAGCCGCTCCGAAAAGCGACCTCGAACAGTTGAGAAAGCAAGGT
GTAGAAGTGGTGTTGGGGTAA

Upstream 100 bases:

>100_bases
ACGGTGTAACGCAGCTTAGCTCACTTCCATCGTTCACAGGCTGCTTTCATATGAAAGTGTTCGGGCGTATACTGCAAGCT
CATCTATAAGGAGCGAGCCT

Downstream 100 bases:

>100_bases
CTAATCTACTTTGCCCTTCTCTTAGCAAGCACGGCGGCAGGGGAGAAGCCTGTCACCAACATCGTTCCACTAAGCACCAG
AATGGTACCTATGATGGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNSRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSDDIDTRLEVRFDIKQALANKA
ADLVSPNETVLIEGGSANGLLARTLAERGDVTIITPSAYIAHLIRNTSANIILLGGVYQHQGESLVGPLTKLCIENIHFS
TAFLGIDGFHQDTGFTSRDMMRAEIAETIIAKQRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG
VEVVLG

Sequences:

>Translated_246_residues
MNSRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSDDIDTRLEVRFDIKQALANKA
ADLVSPNETVLIEGGSANGLLARTLAERGDVTIITPSAYIAHLIRNTSANIILLGGVYQHQGESLVGPLTKLCIENIHFS
TAFLGIDGFHQDTGFTSRDMMRAEIAETIIAKQRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG
VEVVLG
>Mature_246_residues
MNSRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSDDIDTRLEVRFDIKQALANKA
ADLVSPNETVLIEGGSANGLLARTLAERGDVTIITPSAYIAHLIRNTSANIILLGGVYQHQGESLVGPLTKLCIENIHFS
TAFLGIDGFHQDTGFTSRDMMRAEIAETIIAKQRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG
VEVVLG

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=237, Percent_Identity=53.5864978902954, Blast_Score=258, Evalue=2e-70,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=31.4741035856574, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI87082344, Length=249, Percent_Identity=25.7028112449799, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=23.8866396761134, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=29.2576419213974, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=28.3400809716599, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI226510968, Length=250, Percent_Identity=26.4, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790635, Length=252, Percent_Identity=27.3809523809524, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1790753, Length=258, Percent_Identity=24.031007751938, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789170, Length=231, Percent_Identity=23.3766233766234, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787063, Length=233, Percent_Identity=24.0343347639485, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 26898; Mature: 26898

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSD
CCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCC
DIDTRLEVRFDIKQALANKAADLVSPNETVLIEGGSANGLLARTLAERGDVTIITPSAYI
CCCCEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEECCHHHH
AHLIRNTSANIILLGGVYQHQGESLVGPLTKLCIENIHFSTAFLGIDGFHQDTGFTSRDM
HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
MRAEIAETIIAKQRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
VEVVLG
CEEECC
>Mature Secondary Structure
MNSRQNEILQLVNDRKRVQVTELSDIIGVSGVTIRQDLNFLEQQGYLKRVHGAATALQSD
CCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCCC
DIDTRLEVRFDIKQALANKAADLVSPNETVLIEGGSANGLLARTLAERGDVTIITPSAYI
CCCCEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEECCHHHH
AHLIRNTSANIILLGGVYQHQGESLVGPLTKLCIENIHFSTAFLGIDGFHQDTGFTSRDM
HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
MRAEIAETIIAKQRRNIVLTDSSKFGQIYPSSIGKTSEISVLLTDEAAPKSDLEQLRKQG
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
VEVVLG
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]