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The map label for this gene is nocR [H]

Identifier: 156977768

GI number: 156977768

Start: 1707334

End: 1708182

Strand: Direct

Name: nocR [H]

Synonym: VIBHAR_06556

Alternate gene names: 156977768

Gene position: 1707334-1708182 (Clockwise)

Preceding gene: 156977766

Following gene: 156977769

Centisome position: 77.46

GC content: 49.0

Gene sequence:

>849_bases
ATGCAAACCGGAACCGTGTCTGGTGCCGCGCGCCTATTGCATGTATCGCAACCTAATGTCACTCGGGTACTTGCCCATAC
GGAACAACAACTTAGCTTTGCCCTGTTTGAGCGTGTCAAAGGCCGCTTAGTACCGACCCAAGAAGCCAAAGCCCTACTGC
CAGAAGCCGAGAAAGTCTACCAACAGCTTGGGCAATTTCGTTCCCTCACCAATAAGGTGAAGCAAGGCACTCAGCACTTG
AGAGTCGGAGCGCCGCCTGTCTTGGCTTCCCAACTGCTTGCTTCAACGGTTGCTACACTTTCAAAGCAACAAGGCATCTC
ATTTGAACTATTAACCGCAAACCGTGATGAGCTGTGTTCAGGCTTACTTAAGCACGAATTGGATGTGGCGATAACTTTTG
GTGAAGAAGCGCCACCCGCAATTTTGAGTGAGGTTTTACTCAAGCAGCAACTCGTTCTGATTGCGCCAAAAGTAGCGCTC
AATTCGGACGACGACGCGGTATCGTTTGATGATTTAATTCAGCACGAATTGCCAATCATCGGCTTGGACAGTCGAGACCC
ACTCGGTTTATTGCTACATCAAACGCTTTCCGCATGTGATGAACATTATCACCATGCGATCACAGTGCGCAGTTACGCCG
CTGCCGCCGAGCTAGTCAAGCATCACGCGGGTTTTGCGATTGTCGACCCATGGACAGCAAAACAGTATCAAGATGACGAA
TCAGTAAGCGTGCGCTCACTTTCTCCAGCGCTGTCATTTTCTATCTCTATCTTGTTTGCAGAACACTCGCCGCAATCCAT
TTCTACGAAGCTTTTTATTGAGTCGCTAAAGCAGCATGTTAATCAGTAA

Upstream 100 bases:

>100_bases
TAGAGACAGGAATGAAGTAAATTAGAGAAACTTATCTTGCTCGATAACCGCAAAGGAAACCGCAGTGAATTTAAGACAAT
TGGAAGTCTTTTACGCCATC

Downstream 100 bases:

>100_bases
GTTAGCACTCATGCCCACCTATAACTTCAAGTTATAGGCGCACAACAAATAGGCATTCGGCTTCCTTCTTCAAACTGACT
ACATTGTCTGAAAACGTACG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MQTGTVSGAARLLHVSQPNVTRVLAHTEQQLSFALFERVKGRLVPTQEAKALLPEAEKVYQQLGQFRSLTNKVKQGTQHL
RVGAPPVLASQLLASTVATLSKQQGISFELLTANRDELCSGLLKHELDVAITFGEEAPPAILSEVLLKQQLVLIAPKVAL
NSDDDAVSFDDLIQHELPIIGLDSRDPLGLLLHQTLSACDEHYHHAITVRSYAAAAELVKHHAGFAIVDPWTAKQYQDDE
SVSVRSLSPALSFSISILFAEHSPQSISTKLFIESLKQHVNQ

Sequences:

>Translated_282_residues
MQTGTVSGAARLLHVSQPNVTRVLAHTEQQLSFALFERVKGRLVPTQEAKALLPEAEKVYQQLGQFRSLTNKVKQGTQHL
RVGAPPVLASQLLASTVATLSKQQGISFELLTANRDELCSGLLKHELDVAITFGEEAPPAILSEVLLKQQLVLIAPKVAL
NSDDDAVSFDDLIQHELPIIGLDSRDPLGLLLHQTLSACDEHYHHAITVRSYAAAAELVKHHAGFAIVDPWTAKQYQDDE
SVSVRSLSPALSFSISILFAEHSPQSISTKLFIESLKQHVNQ
>Mature_282_residues
MQTGTVSGAARLLHVSQPNVTRVLAHTEQQLSFALFERVKGRLVPTQEAKALLPEAEKVYQQLGQFRSLTNKVKQGTQHL
RVGAPPVLASQLLASTVATLSKQQGISFELLTANRDELCSGLLKHELDVAITFGEEAPPAILSEVLLKQQLVLIAPKVAL
NSDDDAVSFDDLIQHELPIIGLDSRDPLGLLLHQTLSACDEHYHHAITVRSYAAAAELVKHHAGFAIVDPWTAKQYQDDE
SVSVRSLSPALSFSISILFAEHSPQSISTKLFIESLKQHVNQ

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=274, Percent_Identity=27.3722627737226, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30839; Mature: 30839

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGTVSGAARLLHVSQPNVTRVLAHTEQQLSFALFERVKGRLVPTQEAKALLPEAEKVY
CCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHH
QQLGQFRSLTNKVKQGTQHLRVGAPPVLASQLLASTVATLSKQQGISFELLTANRDELCS
HHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
GLLKHELDVAITFGEEAPPAILSEVLLKQQLVLIAPKVALNSDDDAVSFDDLIQHELPII
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHCCCEE
GLDSRDPLGLLLHQTLSACDEHYHHAITVRSYAAAAELVKHHAGFAIVDPWTAKQYQDDE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCC
SVSVRSLSPALSFSISILFAEHSPQSISTKLFIESLKQHVNQ
CCCHHHCCHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQTGTVSGAARLLHVSQPNVTRVLAHTEQQLSFALFERVKGRLVPTQEAKALLPEAEKVY
CCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHH
QQLGQFRSLTNKVKQGTQHLRVGAPPVLASQLLASTVATLSKQQGISFELLTANRDELCS
HHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
GLLKHELDVAITFGEEAPPAILSEVLLKQQLVLIAPKVALNSDDDAVSFDDLIQHELPII
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHCCCEE
GLDSRDPLGLLLHQTLSACDEHYHHAITVRSYAAAAELVKHHAGFAIVDPWTAKQYQDDE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCC
SVSVRSLSPALSFSISILFAEHSPQSISTKLFIESLKQHVNQ
CCCHHHCCHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]