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The map label for this gene is yjcC [C]

Identifier: 156977726

GI number: 156977726

Start: 1668144

End: 1669631

Strand: Direct

Name: yjcC [C]

Synonym: VIBHAR_06514

Alternate gene names: 156977726

Gene position: 1668144-1669631 (Clockwise)

Preceding gene: 156977724

Following gene: 156977727

Centisome position: 75.69

GC content: 43.82

Gene sequence:

>1488_bases
ATGGTGGCATTTATCCCTTTTGCCCATCAATATCATAAAAAGCTCACACAACAGGCAGTAGAGGCAATTGAATCTGAGTT
TCACAGCAATGTTCAACAGTTAGCTCATTTACTCGATGATGAGTTTTATCTCAAACCGTGTAGCGAACTGATCCACGACT
TACGCACCAACATCTTTGGTTTAGGGATGGCAAAAGACATCGCTACATTTGATCAAAATGGCAAGGTACAGTGCACCAGT
AGCGAACGTCATCCGTCCTTTCGGATTTACTCGAAAATACTAAAACGCTTTGGTGATAGCGATGTACACGCCACGCTGTC
TTACACGCAGCGAGCGTTGACCAATAACCAAGCATTGATCCTATTTTTTAGTTCGGATAAAGGGCGAGGCATCAGTGTGG
TATTTCCAAAACAAGTACTGGAAATGCTGGTGAAGGATATTTTTAGCTTCGGTGACATGAAATATCGAGTCGATATTATT
AATCGAACCGCTGTTGATCTGACTGATGGCAACGCACTGCGCAGCGAACAAATCACTTCAGAAATCCTCCCTTTCACGGT
CTACTCGACAATTGGTTATGCATTCTATTGGCAATTCTTGGCAAGCAAGTTATGGATTGGGCTGCTAGGAATGGCCTGTG
CTCTGGTCGTCCATCTGTTTTTTAATTCAAAAAAGGTGGCCAGAAACAGTTTGGAGTTCTCTCTGGCTCAAGCTATCAAA
GGGCGCAACTTGAGTGTGCATTATCAGCCTATCGTTGACCAACGTGATGGCAGTGTCATCGGTGGCGAGCCTTTAGTGCG
CTGGAACGACCCGGTTCAAGGGTTCATTTCTCCTGGTATCTTTATCCCTCTTGCCGAGAAAGTTGGGATGATCGATCAAA
TCACTTATCTGGTGTTGGATAAAGCGATCAAGATGATCTCAACAAATAAGAAAGCCTTTCATGATCGCTACATTAGCGTA
AACGTCAGTCGCTCTTTGATTCTCAGAAATGACTTCATTAAAGAAGTCGAGTCTCGCTTGATGTTCAGTTATTTCATTAG
TGAACGTTTGGTATTTGAAATTACCGAAGAAGCGATTTTTAACAAAGATGAGTTTTCAATATTGCGTCAACACTTGGACC
GACTGGCCTCACTGGGCATTCGTATTGCCGTTGATGATTTTGGTACAGGCTATTCTGGTCTGGATTTTATTGGGCAATAC
CCATTCGACATCATCAAGATTGCTCGCGTCTTCGTAACCAGTTTAGGTAACGGAAAAACAACTCAACCTTTACTCGAGGC
GATACACACTCTTTCCCAGACACTGAATATGTCTGTCATTGTGGAAGGTGTCGAAGAGGAGGCGCAATTGTGGGCTCTAC
ATGACCTCGGCTTCTACAACATACAGGGCTTCTACTTTTCAAAACCTATTCCAAAGCCTGAGTTTCTAGACTATTTGGCA
TTGCACCAACCAGCCGATCTTCAAACTCTCGCGCCTGCGCTTAGCTAA

Upstream 100 bases:

>100_bases
ACTTATATCTGTGGCAAATCGATTCTTCTCCAATCCATCTAAAAAGTGGAGTAACAACCTCACACTGTGTGTTGTCGGCC
TACTCTCTTTTTCGATCACT

Downstream 100 bases:

>100_bases
GATTAATCAACCCAATTTTTGGCTGAGCAAGCGGTGCTCAGCCAAAGCTTTCTCCCTCAATACATCGTCAAATTCAGTCG
TTAATTACAAATGCATGAAT

Product: sensory transduction protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MVAFIPFAHQYHKKLTQQAVEAIESEFHSNVQQLAHLLDDEFYLKPCSELIHDLRTNIFGLGMAKDIATFDQNGKVQCTS
SERHPSFRIYSKILKRFGDSDVHATLSYTQRALTNNQALILFFSSDKGRGISVVFPKQVLEMLVKDIFSFGDMKYRVDII
NRTAVDLTDGNALRSEQITSEILPFTVYSTIGYAFYWQFLASKLWIGLLGMACALVVHLFFNSKKVARNSLEFSLAQAIK
GRNLSVHYQPIVDQRDGSVIGGEPLVRWNDPVQGFISPGIFIPLAEKVGMIDQITYLVLDKAIKMISTNKKAFHDRYISV
NVSRSLILRNDFIKEVESRLMFSYFISERLVFEITEEAIFNKDEFSILRQHLDRLASLGIRIAVDDFGTGYSGLDFIGQY
PFDIIKIARVFVTSLGNGKTTQPLLEAIHTLSQTLNMSVIVEGVEEEAQLWALHDLGFYNIQGFYFSKPIPKPEFLDYLA
LHQPADLQTLAPALS

Sequences:

>Translated_495_residues
MVAFIPFAHQYHKKLTQQAVEAIESEFHSNVQQLAHLLDDEFYLKPCSELIHDLRTNIFGLGMAKDIATFDQNGKVQCTS
SERHPSFRIYSKILKRFGDSDVHATLSYTQRALTNNQALILFFSSDKGRGISVVFPKQVLEMLVKDIFSFGDMKYRVDII
NRTAVDLTDGNALRSEQITSEILPFTVYSTIGYAFYWQFLASKLWIGLLGMACALVVHLFFNSKKVARNSLEFSLAQAIK
GRNLSVHYQPIVDQRDGSVIGGEPLVRWNDPVQGFISPGIFIPLAEKVGMIDQITYLVLDKAIKMISTNKKAFHDRYISV
NVSRSLILRNDFIKEVESRLMFSYFISERLVFEITEEAIFNKDEFSILRQHLDRLASLGIRIAVDDFGTGYSGLDFIGQY
PFDIIKIARVFVTSLGNGKTTQPLLEAIHTLSQTLNMSVIVEGVEEEAQLWALHDLGFYNIQGFYFSKPIPKPEFLDYLA
LHQPADLQTLAPALS
>Mature_495_residues
MVAFIPFAHQYHKKLTQQAVEAIESEFHSNVQQLAHLLDDEFYLKPCSELIHDLRTNIFGLGMAKDIATFDQNGKVQCTS
SERHPSFRIYSKILKRFGDSDVHATLSYTQRALTNNQALILFFSSDKGRGISVVFPKQVLEMLVKDIFSFGDMKYRVDII
NRTAVDLTDGNALRSEQITSEILPFTVYSTIGYAFYWQFLASKLWIGLLGMACALVVHLFFNSKKVARNSLEFSLAQAIK
GRNLSVHYQPIVDQRDGSVIGGEPLVRWNDPVQGFISPGIFIPLAEKVGMIDQITYLVLDKAIKMISTNKKAFHDRYISV
NVSRSLILRNDFIKEVESRLMFSYFISERLVFEITEEAIFNKDEFSILRQHLDRLASLGIRIAVDDFGTGYSGLDFIGQY
PFDIIKIARVFVTSLGNGKTTQPLLEAIHTLSQTLNMSVIVEGVEEEAQLWALHDLGFYNIQGFYFSKPIPKPEFLDYLA
LHQPADLQTLAPALS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=33.469387755102, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI87081921, Length=249, Percent_Identity=34.9397590361446, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081845, Length=323, Percent_Identity=34.0557275541796, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI87081980, Length=313, Percent_Identity=29.073482428115, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1787541, Length=248, Percent_Identity=33.8709677419355, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1788502, Length=316, Percent_Identity=31.3291139240506, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081743, Length=275, Percent_Identity=29.4545454545455, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI226510982, Length=324, Percent_Identity=26.2345679012346, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787055, Length=249, Percent_Identity=30.5220883534137, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=29.7071129707113, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082096, Length=199, Percent_Identity=31.1557788944724, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=25.5605381165919, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 56113; Mature: 56113

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAFIPFAHQYHKKLTQQAVEAIESEFHSNVQQLAHLLDDEFYLKPCSELIHDLRTNIFG
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
LGMAKDIATFDQNGKVQCTSSERHPSFRIYSKILKRFGDSDVHATLSYTQRALTNNQALI
CCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEE
LFFSSDKGRGISVVFPKQVLEMLVKDIFSFGDMKYRVDIINRTAVDLTDGNALRSEQITS
EEEECCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCCCHHHHHHHH
EILPFTVYSTIGYAFYWQFLASKLWIGLLGMACALVVHLFFNSKKVARNSLEFSLAQAIK
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GRNLSVHYQPIVDQRDGSVIGGEPLVRWNDPVQGFISPGIFIPLAEKVGMIDQITYLVLD
CCCCEEEEEECCCCCCCCEECCCCCEECCCCHHHHCCCCEEEECHHHCCHHHHHHHHHHH
KAIKMISTNKKAFHDRYISVNVSRSLILRNDFIKEVESRLMFSYFISERLVFEITEEAIF
HHHHHHHCCCHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NKDEFSILRQHLDRLASLGIRIAVDDFGTGYSGLDFIGQYPFDIIKIARVFVTSLGNGKT
CCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCC
TQPLLEAIHTLSQTLNMSVIVEGVEEEAQLWALHDLGFYNIQGFYFSKPIPKPEFLDYLA
HHHHHHHHHHHHHHCCHHEEEECCHHHHHEEEEECCCEEEECCEEECCCCCCHHHHHHHH
LHQPADLQTLAPALS
HCCCCCHHHHCCCCC
>Mature Secondary Structure
MVAFIPFAHQYHKKLTQQAVEAIESEFHSNVQQLAHLLDDEFYLKPCSELIHDLRTNIFG
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
LGMAKDIATFDQNGKVQCTSSERHPSFRIYSKILKRFGDSDVHATLSYTQRALTNNQALI
CCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEE
LFFSSDKGRGISVVFPKQVLEMLVKDIFSFGDMKYRVDIINRTAVDLTDGNALRSEQITS
EEEECCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCCCHHHHHHHH
EILPFTVYSTIGYAFYWQFLASKLWIGLLGMACALVVHLFFNSKKVARNSLEFSLAQAIK
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GRNLSVHYQPIVDQRDGSVIGGEPLVRWNDPVQGFISPGIFIPLAEKVGMIDQITYLVLD
CCCCEEEEEECCCCCCCCEECCCCCEECCCCHHHHCCCCEEEECHHHCCHHHHHHHHHHH
KAIKMISTNKKAFHDRYISVNVSRSLILRNDFIKEVESRLMFSYFISERLVFEITEEAIF
HHHHHHHCCCHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NKDEFSILRQHLDRLASLGIRIAVDDFGTGYSGLDFIGQYPFDIIKIARVFVTSLGNGKT
CCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCC
TQPLLEAIHTLSQTLNMSVIVEGVEEEAQLWALHDLGFYNIQGFYFSKPIPKPEFLDYLA
HHHHHHHHHHHHHHCCHHEEEECCHHHHHEEEEECCCEEEECCEEECCCCCCHHHHHHHH
LHQPADLQTLAPALS
HCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]