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The map label for this gene is ypfJ [H]

Identifier: 156977720

GI number: 156977720

Start: 1662716

End: 1663705

Strand: Reverse

Name: ypfJ [H]

Synonym: VIBHAR_06508

Alternate gene names: 156977720

Gene position: 1663705-1662716 (Counterclockwise)

Preceding gene: 156977721

Following gene: 156977718

Centisome position: 75.49

GC content: 47.07

Gene sequence:

>990_bases
TTGATTTTAGAAGCCTTTGATTTGGGTAATATCCTTAAAATTGAACCACAATGTAAAGTGAAATCAGCATCGCGACAGGA
GGAAAACATGCGATGGCGCAATAGTAAAAGAAGCTCAAACGTAGAAGACCGTCGAGGACAATCAGGGGCAAGAAGCTCTG
CCTCAACAGGCTTACTCGTTGCGCAATTGTTCCGTTTTCTGCCTTTCCTCTTAAAAAGCAAGGTAGGGCGAGTGGTGTTA
CTTGGTGGTGTTCTGTTCTTTGGGTATCAAGCTCTTATGGGAGATGGTGATATGATGGGACAAATTGCAGGCACGCCAGC
GGTAACGCAACAGTCAAACAACTCAGCTGATAGCCAAGCGTTAACGGATGAGAATGCCCAATTTGTTGCGGCTATACTAG
GAACGACCGAAACGGTTTGGGGTGAACTGCTGCCTAATGGTTATTCAGAGCCGACTTTAGTGTTGTACAGTGGTTCTACA
ATGACAGGGTGCGGCGTGGGCAGGGCGGTGACTGGGCCGTTTTATTGTCCAGCAGATCGGAAAATATATCTAGATTTGAG
CTTTATGGATGAGCTTAAAAGACTCGGAGCCCCGGGAGACTTTGCCTTCGCTTACGTAATTGCTCATGAAGTTGGCCACC
ACGTACAAACACTGCTTGGCACCAGCAATCAAGTTCGCCAATTGCAACAGCAATCCTCTAGAGTTGAAGCGAATGAATTG
AGTGTCAAACTTGAACTGCAAGCTGACTGCTACGCTGGCGTATGGGGATTCTACGTCAATAATGAGATGAAACTGCTTGA
GCCTGGAGATATGGAAGAGGGGATTGCTGCGGCAAGTGCTGTGGGCGATGACCGATTACAATCTATGGCAGGGCAAAGTG
TACAGCCCGATAGTTTTACTCATGGATCTTCAGAGCAGCGGGTCGAGTGGTTTCAAAAAGGCTTTCAATCGGGTGATCCA
AACCAATGCCAAACATTCGAAACTAACTGA

Upstream 100 bases:

>100_bases
AGTGACTTGTACCGAGCATTTTGGCGTAGATATTACAAAGTAGCTCTAACGCATAATGATCACGAGTGCCTAGGATCAGT
CTTGTGATTCTAGGCACCTG

Downstream 100 bases:

>100_bases
GCAATGATGAGAGAGAATTATACAGTTTGAAGGTCAAGCAACCGTGATCTTGGTTTTGCTGTTTACAAAGAGTGAAACCA
GACGGGAGCTTGACCTTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MILEAFDLGNILKIEPQCKVKSASRQEENMRWRNSKRSSNVEDRRGQSGARSSASTGLLVAQLFRFLPFLLKSKVGRVVL
LGGVLFFGYQALMGDGDMMGQIAGTPAVTQQSNNSADSQALTDENAQFVAAILGTTETVWGELLPNGYSEPTLVLYSGST
MTGCGVGRAVTGPFYCPADRKIYLDLSFMDELKRLGAPGDFAFAYVIAHEVGHHVQTLLGTSNQVRQLQQQSSRVEANEL
SVKLELQADCYAGVWGFYVNNEMKLLEPGDMEEGIAAASAVGDDRLQSMAGQSVQPDSFTHGSSEQRVEWFQKGFQSGDP
NQCQTFETN

Sequences:

>Translated_329_residues
MILEAFDLGNILKIEPQCKVKSASRQEENMRWRNSKRSSNVEDRRGQSGARSSASTGLLVAQLFRFLPFLLKSKVGRVVL
LGGVLFFGYQALMGDGDMMGQIAGTPAVTQQSNNSADSQALTDENAQFVAAILGTTETVWGELLPNGYSEPTLVLYSGST
MTGCGVGRAVTGPFYCPADRKIYLDLSFMDELKRLGAPGDFAFAYVIAHEVGHHVQTLLGTSNQVRQLQQQSSRVEANEL
SVKLELQADCYAGVWGFYVNNEMKLLEPGDMEEGIAAASAVGDDRLQSMAGQSVQPDSFTHGSSEQRVEWFQKGFQSGDP
NQCQTFETN
>Mature_329_residues
MILEAFDLGNILKIEPQCKVKSASRQEENMRWRNSKRSSNVEDRRGQSGARSSASTGLLVAQLFRFLPFLLKSKVGRVVL
LGGVLFFGYQALMGDGDMMGQIAGTPAVTQQSNNSADSQALTDENAQFVAAILGTTETVWGELLPNGYSEPTLVLYSGST
MTGCGVGRAVTGPFYCPADRKIYLDLSFMDELKRLGAPGDFAFAYVIAHEVGHHVQTLLGTSNQVRQLQQQSSRVEANEL
SVKLELQADCYAGVWGFYVNNEMKLLEPGDMEEGIAAASAVGDDRLQSMAGQSVQPDSFTHGSSEQRVEWFQKGFQSGDP
NQCQTFETN

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=301, Percent_Identity=50.4983388704319, Blast_Score=284, Evalue=5e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 35894; Mature: 35894

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILEAFDLGNILKIEPQCKVKSASRQEENMRWRNSKRSSNVEDRRGQSGARSSASTGLLV
CEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHH
AQLFRFLPFLLKSKVGRVVLLGGVLFFGYQALMGDGDMMGQIAGTPAVTQQSNNSADSQA
HHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHH
LTDENAQFVAAILGTTETVWGELLPNGYSEPTLVLYSGSTMTGCGVGRAVTGPFYCPADR
HCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCCEECCCCC
KIYLDLSFMDELKRLGAPGDFAFAYVIAHEVGHHVQTLLGTSNQVRQLQQQSSRVEANEL
EEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCE
SVKLELQADCYAGVWGFYVNNEMKLLEPGDMEEGIAAASAVGDDRLQSMAGQSVQPDSFT
EEEEEECCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
HGSSEQRVEWFQKGFQSGDPNQCQTFETN
CCCCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MILEAFDLGNILKIEPQCKVKSASRQEENMRWRNSKRSSNVEDRRGQSGARSSASTGLLV
CEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHH
AQLFRFLPFLLKSKVGRVVLLGGVLFFGYQALMGDGDMMGQIAGTPAVTQQSNNSADSQA
HHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHH
LTDENAQFVAAILGTTETVWGELLPNGYSEPTLVLYSGSTMTGCGVGRAVTGPFYCPADR
HCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCCEECCCCC
KIYLDLSFMDELKRLGAPGDFAFAYVIAHEVGHHVQTLLGTSNQVRQLQQQSSRVEANEL
EEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCE
SVKLELQADCYAGVWGFYVNNEMKLLEPGDMEEGIAAASAVGDDRLQSMAGQSVQPDSFT
EEEEEECCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
HGSSEQRVEWFQKGFQSGDPNQCQTFETN
CCCCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]