Click here to switch to the map view.

The map label for this gene is ykfC [C]

Identifier: 156977672

GI number: 156977672

Start: 1617274

End: 1618209

Strand: Direct

Name: ykfC [C]

Synonym: VIBHAR_06460

Alternate gene names: 156977672

Gene position: 1617274-1618209 (Clockwise)

Preceding gene: 156977671

Following gene: 156977674

Centisome position: 73.38

GC content: 44.23

Gene sequence:

>936_bases
ATGTGGGGATCCCTCAGCATCAAAGCCTGTTTCGACAAGATTGGGCATCAATGGCTTATGAACAACATTGCCGTGGATAA
ACGCATGTTGGAACAATGGTTAAAGTCTGGTTTTATGGACAAAGGGCTGTTCTATCGTACAGATGAGGGAACACCTCAAG
GCGGGGTTATATCCCCCACCTTGATGCTAATGACCCTTGCAGGAATTGAGCTGCGCATAAAGTCTACCGCTCTCAAAAAG
GGGGCAAGAGCTAACTTTATTGGATACGCCGACGATTTCGTCGTCACCTGTGCTTCAAAGGAAGTGCTGGAGAACGATAT
CAAACCGTTGATTGCTGATTTCTTAGCAGAAAGAGGCTTAACACTCTCCGAAGAGAAAACGCACATTACTCATATCAGTC
GTGGTTTTGATTTCCTAGGTTTTAACCATAGGAAGTACAAAGGAAAATTGCTCATTAAACCGAGTAAATCCAACACACTG
TTGTTCTTGAGTAACTTGCGCGAACTCATCAAAAAGCACGCAACTATCCCCGTCAACGATTTAATCAAATTGATAAATCC
GAAACTACGGGGCTGGTCGAATTACTATCGACACTGCGTGGCCAAACAGGTATTCGGATATGTAGGTCACAAGCTATTCC
ATACGCTATGGCACTGGGCTAAAAGGCGTCATCCAACCAAATCGAGAACTTGGATCGCTCTTAAGTACTTCATCAACCGT
CAAGGCCAATGGCAATTTCACGGTTGGCAGAAGATCATGAATATGGATTGTCAGTTCAATCTGTTTCAAATAGCCAAGGT
GCCAATAGAGAGACATGTGAAAATCAGGAGTGCCGCAACGCCTTTTGACCCTCAATACCAAGAATACTTGGCAAAGAGAA
AGTCAAAAAGGCAATGTCGTAACTCTTGGCATGAGCCTGCTCTCGCTGCTTTATAA

Upstream 100 bases:

>100_bases
GAGTTGATAGGAAGAGAAGCTTACTCATTTAGCGTGAAGGATCTGGCCTTAGCCGTAGGAGGCCTCAAAGCGATAAGTGC
GGCAGAGTTCCGGTGAAAAG

Downstream 100 bases:

>100_bases
GTTGCTGGGTGCCAATAGGTGCCTTCGTGAAGGCTTGAGCCTAGTGCGGTGAAAGTTGCACGCTGGGTTCTTAGAGGGAC
GGCACTTGGTAACAAGTGTC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Reverse Transcriptase; Group II Intron Maturase-Specific Domain Family; Group II Intron-Encoding Maturase; Maturase; Reverse Transcriptase/Maturase; Group II Intron Maturase-Specific; Retron-Type Reverse Transcriptase; Reverse Transcriptase/Endonuclease Protein; Reverse Transcriptase-Like Protein; Group II Intron Encoded Reverse Transcriptase; Reverse Transcriptase/Maturase Family Protein; Reverse Transcriptase/Maturase Protein; Reverse Transcriptase/Maturase Group FT II Introns; Transposase; Reverse Transcriptase/Maturase-Like Protein; GBSi1 Group II Intron Maturase; Maturase-Group II Intron; RNA-Directed DNA Polymerase OrfB; Ecombinase For Bh.Int; Group II Intron/Maturase; Reverse Transcriptase Interruption-C; Group II Intron Reverse Transcriptase/Maturase; Na-Directed DNA Polymerase; Retron Type Reverse Transcriptase

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MWGSLSIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLMLMTLAGIELRIKSTALKK
GARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTLSEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTL
LFLSNLRELIKKHATIPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINR
QGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNSWHEPALAAL

Sequences:

>Translated_311_residues
MWGSLSIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLMLMTLAGIELRIKSTALKK
GARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTLSEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTL
LFLSNLRELIKKHATIPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINR
QGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNSWHEPALAAL
>Mature_311_residues
MWGSLSIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLMLMTLAGIELRIKSTALKK
GARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTLSEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTL
LFLSNLRELIKKHATIPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINR
QGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNSWHEPALAAL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36203; Mature: 36203

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWGSLSIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHH
LMLMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGL
HHHHHHHCCCEEEHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
TLSEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVND
CCCCCHHHHHHHHCCCHHCCCCCCEECCEEEEEECCCCEEEEHHHHHHHHHHCCCCCHHH
LIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINR
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
QGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCR
CCCEEEHHHHHHHCCCCCCCHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHH
NSWHEPALAAL
HHCCCCHHHCC
>Mature Secondary Structure
MWGSLSIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHH
LMLMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGL
HHHHHHHCCCEEEHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCC
TLSEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVND
CCCCCHHHHHHHHCCCHHCCCCCCEECCEEEEEECCCCEEEEHHHHHHHHHHCCCCCHHH
LIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINR
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
QGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCR
CCCEEEHHHHHHHCCCCCCCHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHH
NSWHEPALAAL
HHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA