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The map label for this gene is ugpB [H]

Identifier: 156977608

GI number: 156977608

Start: 1564546

End: 1565853

Strand: Direct

Name: ugpB [H]

Synonym: VIBHAR_06396

Alternate gene names: 156977608

Gene position: 1564546-1565853 (Clockwise)

Preceding gene: 156977605

Following gene: 156977609

Centisome position: 70.99

GC content: 48.62

Gene sequence:

>1308_bases
ATGGCTATGAAACACCTCGCCGGACTTGCTGTTGCAGCGGCATTGATCAGCACACAAGCACAAGCAAAAACTGAGGTTGA
GTGGTGGCATGCAATGGGTGGCGCGCTAGGTAAAAAGGTCAATGAAATTGCCGCAGACTTTAACGCAAGCCAATCAGAAT
ACGAGATCAAGCCAGTTTACAAAGGCAGTTACGCAGAAACCATGACAAGTGCTATCGCTGCGTTTCGTGCAAAAGAACAA
CCTGCAATCGTGCAAGTGTTCGAAGTCGGTACAGCCACCATGATGGGTGCAGAAAAAGCGATTTATCCAGTTTACCAATT
GATGAACGACACCAAAGAACCGTTCAATCCAGATGATTACCTTGCGGCAGTAACGGGTTACTACACCACCAACGACGGCA
ACATGCTTTCACTGCCATTTAACAGCTCTACACCAGTGCTTTACTACAACAAAAATATGTTCGAGAAAGCAGGCGTAACA
AACCCGCCTAAAACGTGGAAAGAGATGGAAGAAGTGTCTCGCAAACTACTGGCGTCTGGCGCAAAGTGTGGTTTCAGCAC
AACGTGGCAATCATGGACGCAAATCGAGAACTTCGGTGCGCGTAACAACGTTCCTGTGGCCAATAACAACAACGGCTTTG
CTGGCCTAAACACAGAATTCAAGTTCAATGATTCAGCCTTCGTTCGACACATTGACCAAATGGGCAAGTGGTCGAAAGAA
GGCATCTTCAAGTACGGCGGTCGCCAATCTGATGGTATGCCACTGTTCTACACCCAAGAGTGTGCAATGACTATGGGTTC
TTCCGCTGGTCTGGCTGGTATCCAAGAGAACATGAAAGACGTCGATATCGGCGTAGCGCAACTGCCTTACGACTCTGAGT
TGGTTGCGAAGCCACAAAACACCATCATCGGTGGCGCATCACTTTGGGTTCTGCGTGGACATTCAAACGAGGAATACAAA
GGCGTGGCGAAGTTCTTCTCTTACCTTTCTAGTGCAGAAGTTCAAGCAGATTGGCACCAGTTCACTGGTTACCTGCCAAT
CACCATAGCGGCTTATGAGCTAACCAAAGAGCAAGGCTTCTACGCTAAGAACCCAGGCACAGATACAGCGGTTCTACAAA
TGACCTCGATAGAGCCTACAGAAAACTCGAAAGGCATTCGCTTCGGTAACTTCCTGCAAACACGTGACATCATCAATGAA
GAGCTAGAAGCAGTGTGGGCAGGCAAAGCAACGGCGCAAGCTGCGCTAAACAATGCGGTTCGTCGTGGTGACGAGCAATT
ACGTCGCTTTGAGCGCACGCAGAAGTAA

Upstream 100 bases:

>100_bases
TCATTTAATGTTCATTTGAATTTTTTGAAGCGGATTCATTATCAAAGTGAACATCCGCAAGGAATCAACCTGTTCAAATC
ATCTATGAAAAGGAATCATT

Downstream 100 bases:

>100_bases
CGAACATTAATAACGAACAATAGTGCGCTGAGTCTTATTCACATAACCACTCAGATACGCACTCTCCCCGCCCACTTTGG
GTGGGGAATTCGTTCACACA

Product: ABC-type sugar transport system periplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MAMKHLAGLAVAAALISTQAQAKTEVEWWHAMGGALGKKVNEIAADFNASQSEYEIKPVYKGSYAETMTSAIAAFRAKEQ
PAIVQVFEVGTATMMGAEKAIYPVYQLMNDTKEPFNPDDYLAAVTGYYTTNDGNMLSLPFNSSTPVLYYNKNMFEKAGVT
NPPKTWKEMEEVSRKLLASGAKCGFSTTWQSWTQIENFGARNNVPVANNNNGFAGLNTEFKFNDSAFVRHIDQMGKWSKE
GIFKYGGRQSDGMPLFYTQECAMTMGSSAGLAGIQENMKDVDIGVAQLPYDSELVAKPQNTIIGGASLWVLRGHSNEEYK
GVAKFFSYLSSAEVQADWHQFTGYLPITIAAYELTKEQGFYAKNPGTDTAVLQMTSIEPTENSKGIRFGNFLQTRDIINE
ELEAVWAGKATAQAALNNAVRRGDEQLRRFERTQK

Sequences:

>Translated_435_residues
MAMKHLAGLAVAAALISTQAQAKTEVEWWHAMGGALGKKVNEIAADFNASQSEYEIKPVYKGSYAETMTSAIAAFRAKEQ
PAIVQVFEVGTATMMGAEKAIYPVYQLMNDTKEPFNPDDYLAAVTGYYTTNDGNMLSLPFNSSTPVLYYNKNMFEKAGVT
NPPKTWKEMEEVSRKLLASGAKCGFSTTWQSWTQIENFGARNNVPVANNNNGFAGLNTEFKFNDSAFVRHIDQMGKWSKE
GIFKYGGRQSDGMPLFYTQECAMTMGSSAGLAGIQENMKDVDIGVAQLPYDSELVAKPQNTIIGGASLWVLRGHSNEEYK
GVAKFFSYLSSAEVQADWHQFTGYLPITIAAYELTKEQGFYAKNPGTDTAVLQMTSIEPTENSKGIRFGNFLQTRDIINE
ELEAVWAGKATAQAALNNAVRRGDEQLRRFERTQK
>Mature_434_residues
AMKHLAGLAVAAALISTQAQAKTEVEWWHAMGGALGKKVNEIAADFNASQSEYEIKPVYKGSYAETMTSAIAAFRAKEQP
AIVQVFEVGTATMMGAEKAIYPVYQLMNDTKEPFNPDDYLAAVTGYYTTNDGNMLSLPFNSSTPVLYYNKNMFEKAGVTN
PPKTWKEMEEVSRKLLASGAKCGFSTTWQSWTQIENFGARNNVPVANNNNGFAGLNTEFKFNDSAFVRHIDQMGKWSKEG
IFKYGGRQSDGMPLFYTQECAMTMGSSAGLAGIQENMKDVDIGVAQLPYDSELVAKPQNTIIGGASLWVLRGHSNEEYKG
VAKFFSYLSSAEVQADWHQFTGYLPITIAAYELTKEQGFYAKNPGTDTAVLQMTSIEPTENSKGIRFGNFLQTRDIINEE
LEAVWAGKATAQAALNNAVRRGDEQLRRFERTQK

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=419, Percent_Identity=51.0739856801909, Blast_Score=434, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48062; Mature: 47930

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMKHLAGLAVAAALISTQAQAKTEVEWWHAMGGALGKKVNEIAADFNASQSEYEIKPVY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
KGSYAETMTSAIAAFRAKEQPAIVQVFEVGTATMMGAEKAIYPVYQLMNDTKEPFNPDDY
CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHH
LAAVTGYYTTNDGNMLSLPFNSSTPVLYYNKNMFEKAGVTNPPKTWKEMEEVSRKLLASG
EEEEEEEEECCCCCEEEECCCCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHCC
AKCGFSTTWQSWTQIENFGARNNVPVANNNNGFAGLNTEFKFNDSAFVRHIDQMGKWSKE
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHCCCCCC
GIFKYGGRQSDGMPLFYTQECAMTMGSSAGLAGIQENMKDVDIGVAQLPYDSELVAKPQN
CHHHCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHCHHHHCCCCEECCCCCHHHCCCCC
TIIGGASLWVLRGHSNEEYKGVAKFFSYLSSAEVQADWHQFTGYLPITIAAYELTKEQGF
CEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCCHHHHCCCCEEEEEEEEHHHHCCC
YAKNPGTDTAVLQMTSIEPTENSKGIRFGNFLQTRDIINEELEAVWAGKATAQAALNNAV
EECCCCCCEEEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RRGDEQLRRFERTQK
HCCHHHHHHHHHCCC
>Mature Secondary Structure 
AMKHLAGLAVAAALISTQAQAKTEVEWWHAMGGALGKKVNEIAADFNASQSEYEIKPVY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
KGSYAETMTSAIAAFRAKEQPAIVQVFEVGTATMMGAEKAIYPVYQLMNDTKEPFNPDDY
CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCCCCHH
LAAVTGYYTTNDGNMLSLPFNSSTPVLYYNKNMFEKAGVTNPPKTWKEMEEVSRKLLASG
EEEEEEEEECCCCCEEEECCCCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHCC
AKCGFSTTWQSWTQIENFGARNNVPVANNNNGFAGLNTEFKFNDSAFVRHIDQMGKWSKE
CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHCCCCCC
GIFKYGGRQSDGMPLFYTQECAMTMGSSAGLAGIQENMKDVDIGVAQLPYDSELVAKPQN
CHHHCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHCHHHHCCCCEECCCCCHHHCCCCC
TIIGGASLWVLRGHSNEEYKGVAKFFSYLSSAEVQADWHQFTGYLPITIAAYELTKEQGF
CEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHCCHHHHCCCCEEEEEEEEHHHHCCC
YAKNPGTDTAVLQMTSIEPTENSKGIRFGNFLQTRDIINEELEAVWAGKATAQAALNNAV
EECCCCCCEEEEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RRGDEQLRRFERTQK
HCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA