| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
Click here to switch to the map view.
The map label for this gene is eda [H]
Identifier: 156977558
GI number: 156977558
Start: 1514920
End: 1515234
Strand: Reverse
Name: eda [H]
Synonym: VIBHAR_06346
Alternate gene names: 156977558
Gene position: 1515234-1514920 (Counterclockwise)
Preceding gene: 156977560
Following gene: 156977557
Centisome position: 68.75
GC content: 50.79
Gene sequence:
>315_bases ATGCCGATCGTACCGGGTGTGAACAACCCAAGTCAGGTTGAGCAAGCACTAGAGTTGGGTTTGAACTTCCTCAAATTCTT CCCGGCAGAAGAGAGCGGTGGTATCGCGATGGTGAAGTCACTACTCGCACCTTATGTTGATGTGAGTCTGATGCCGACCG GCGGTATCGGTAAAAGCAACGTCAATGATTACCTAGCTTTCGACCGTGTGGTTTGCTGCGGTGGTACTTGGATGGTTGCG CCGAGCTTAATTGAAAACGAACAATGGGACGAAATTGGCAAGCTGGTTCGTGAAGCAGTAGAGCTGGTCGCGTAA
Upstream 100 bases:
>100_bases CTGCCTACTTTTCACGCTATCTACATGATTCTTCTATGCTAGTTGTGGGGAGCCCTCAGGGTTGAACCCCAATACCGTGC GTCGTTGCCAAGAAATCAAC
Downstream 100 bases:
>100_bases CTCAAACAGAGCTCTTTTACCCAAGTCACCAGACCCCATTAAATAGCGTGACTTGGGTTGAACAATTATAGGGTCTGTTG AACTTTCGAGCTGATTTTTG
Product: 2-keto-3-deoxy-6-phosphogluconatealdolase
Products: NA
Alternate protein names: 4-hydroxy-2-oxoglutarate aldolase; 2-keto-4-hydroxyglutarate aldolase; KHG-aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 104; Mature: 103
Protein sequence:
>104_residues MPIVPGVNNPSQVEQALELGLNFLKFFPAEESGGIAMVKSLLAPYVDVSLMPTGGIGKSNVNDYLAFDRVVCCGGTWMVA PSLIENEQWDEIGKLVREAVELVA
Sequences:
>Translated_104_residues MPIVPGVNNPSQVEQALELGLNFLKFFPAEESGGIAMVKSLLAPYVDVSLMPTGGIGKSNVNDYLAFDRVVCCGGTWMVA PSLIENEQWDEIGKLVREAVELVA >Mature_103_residues PIVPGVNNPSQVEQALELGLNFLKFFPAEESGGIAMVKSLLAPYVDVSLMPTGGIGKSNVNDYLAFDRVVCCGGTWMVAP SLIENEQWDEIGKLVREAVELVA
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=101, Percent_Identity=41.5841584158416, Blast_Score=97, Evalue=2e-22,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.3.16; =4.1.2.14 [H]
Molecular weight: Translated: 11196; Mature: 11065
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: PS00160 ALDOLASE_KDPG_KHG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIVPGVNNPSQVEQALELGLNFLKFFPAEESGGIAMVKSLLAPYVDVSLMPTGGIGKSN CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCEEECCCCCCCCCC VNDYLAFDRVVCCGGTWMVAPSLIENEQWDEIGKLVREAVELVA CHHHHHHHHHHHCCCCHHHCCHHHCCCCHHHHHHHHHHHHHHHC >Mature Secondary Structure PIVPGVNNPSQVEQALELGLNFLKFFPAEESGGIAMVKSLLAPYVDVSLMPTGGIGKSN CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCEEECCCCCCCCCC VNDYLAFDRVVCCGGTWMVAPSLIENEQWDEIGKLVREAVELVA CHHHHHHHHHHHCCCCHHHCCHHHCCCCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]