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The map label for this gene is 156977541

Identifier: 156977541

GI number: 156977541

Start: 1501099

End: 1501776

Strand: Reverse

Name: 156977541

Synonym: VIBHAR_06329

Alternate gene names: NA

Gene position: 1501776-1501099 (Counterclockwise)

Preceding gene: 156977545

Following gene: 156977538

Centisome position: 68.14

GC content: 49.12

Gene sequence:

>678_bases
TTGTGGGGAGCCCTCAGGCGTAGAGGGCATAAGTTCTGTCGATATGCAGACGACTGTCAAATCTATGTTGGTAGTGAGGA
AGCCGCTTATCGAGTGAAAGAGTCGATAACGGAGTACTTGGAGCAAAAACTGAAACTCACGGTAAACCGAGAGAAAAGTG
CAGCAACAAGAGTGACAGAGCGAACTTACCTAAGCCACCGCTTCGGGATAGATGGGACAATCCATATATCGAAGCCAGCG
CAAACTCAAATGAAGACGCGAGTGCGGCAGATAACGAAGCGAAACCGAGGTCGAGAGTTAAAGGTGATAATCGCCGAGTT
AACTCAATACCTAAGAGGTTGGCAAGACTACTTCAAACTCGCCATACGGAAGAGCAGCATGAAGCGCTTGGACGAATGGA
TACGGCGACGGCTAAGATGCTATCGACTTAAGCAACGCAAACACAGATACGGCATAGCGACATGGTTACAGCGACAAGGT
GTAACAGAGCGTAATGCGTGGAAGTTAGCGATGTCAGATAAAGGTTGGTGGCGGCTAGCATTAACGCCCCAGACAAATCA
CGCTATGCCAACAAAATGGTTCGAGGAGTTGGGTCTGTACTCGTTGCGAGATGGGTATGAGTCACTAAAAGTATATTCGG
AACCGCCGTATGCGACCCACGCTTGTACGGTGGTGTGA

Upstream 100 bases:

>100_bases
TGAGACTCGTCGGGTCATATCTTTTCAATTGATGCTATAATCGCCGATCAAAATGAATCTGCCTACTTTTCACGCTATCT
ACATGATTCTTCTATGCTAG

Downstream 100 bases:

>100_bases
GAGGACGGAGGCCGTGAGGCCTCCTCCTACTCGATTTTGATGGTTGTCTGAGACTGATTAGGCGTAATCCGCTTAGTAGT
CCGACGTACCACGGATAGGG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Reverse Transcriptase/Maturase Family Protein; Reverse Transcriptase/Maturase; Reverse Transcriptase; Group II Intron-Encoding Maturase; GBSi1 Group II Intron Maturase; Retron-Type Reverse Transcriptase; Maturase; Group II Intron Maturase-Specific Domain Protein; Reverse Transcriptase/Maturase Group FT II Introns; Recombinase; Group II Intron-Encoding Maturase Variant; Reverse Transcriptase Family Protein; Transposase; Regulatory Protein GntR; Ecombinase For Bh.Int; Group II Intron-Encoded Maturase; Integron/Retron-Type RNA-Directed DNA Polymerase; Group II Intron Maturase; Group II Intron-Encoded Protein; Reverse Transcriptasematurase Protein; Group II Intron Reverse Transcriptase/Maturase; Na-Directed DNA Polymerase

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MWGALRRRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPA
QTQMKTRVRQITKRNRGRELKVIIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQG
VTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV

Sequences:

>Translated_225_residues
MWGALRRRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPA
QTQMKTRVRQITKRNRGRELKVIIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQG
VTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
>Mature_225_residues
MWGALRRRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPA
QTQMKTRVRQITKRNRGRELKVIIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQG
VTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26881; Mature: 26881

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWGALRRRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTE
CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVIIAELTQYLRGWQDYFKL
HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEE
LTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
ECCCCCCCCCHHHHHHCCCHHHHCCHHHHEECCCCCCCCCCEECC
>Mature Secondary Structure
MWGALRRRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTE
CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVIIAELTQYLRGWQDYFKL
HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEE
LTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
ECCCCCCCCCHHHHHHCCCHHHHCCHHHHEECCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA