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The map label for this gene is yebA [H]

Identifier: 156977518

GI number: 156977518

Start: 1483259

End: 1484578

Strand: Reverse

Name: yebA [H]

Synonym: VIBHAR_06306

Alternate gene names: 156977518

Gene position: 1484578-1483259 (Counterclockwise)

Preceding gene: 156977519

Following gene: 156977514

Centisome position: 67.36

GC content: 46.06

Gene sequence:

>1320_bases
ATGAGCCTTGTTATAAAGGAGATAGTAATTCCCGTGTCTACAAATGAAGTTACAACAAGACGGTTGCCGAATCTGACAAG
TCGTAAAGCGCTACTGTTGTACTCCTTGCCAGTATTAGTTGCGATTGGTGTTTCCAACTCTCTCAAAGAGTCTTCCCTTA
CTAAAACCATCGCATTGAACCTGCCTGAAACGCAGGTTGTCGAAAATATTCTTGATGCGACAACAGCAGAAGTTGTCACT
CCACCAAATTTTGAATACCAAATCCAAGCAGGTGATAACCTGAGTACCATTTTCAGCCAACTAGGCTTAGGCTACAGCTC
GTTGATGAAAGTGATGGAAACGGATTTGAACTTCCTTGCTCTTGATACCTTGAAACCTGGTAACACACTGCGTTTTTGGC
GCAATGAATCTACGGGCGAACTTGAAAAAATGGAACTGCAATTCTCTATTGCAGATAAAGTGGTTTACCATCGTAATGAC
GATGGCAGCTACGATTTCTCAGACATCTCAATTCCTGGTGTTTGGACGCAAGAGCCTTTGGTCGGTGTTATTCGAGGTAG
CTTCTCGTCATCCGCAAATCGTTTGGGCTTGAGCTCAGCAGAAATCAGTCAAGTGGTTAACTTACTTAAAGAGCAAGTGA
ACTTCGGCAAAGATTTACGCGCTGGTGACCGGTTTGAAGTGGTTCGCCGCTCTCAAAGTATTGATGGTGTGCCAACTGGC
AAGAACGAAATAGAAGCAATCAAAATTTATAACCGTGGTCGTGAAGTCACCGCTTACCTTCACACTGACGGTCAATTCTA
CAATGCGAAAGGTGAGAGCCTTCAGCGTGCTTTCCAACGTTACCCTGTTAGCCGAGGCTGGCGCATCAGTTCTGGATTCA
ACCCTAAACGTCTTCACCCTGTAACGGGCCGTGTAGCACCACATAACGGAACAGACTGGGCGGTACCGACAGGAACACCT
GTAGAGGCAACGGGTGATGGTACCGTGATCATGACTCGCAAACACCCGTACGCAGGTAACTATGTGGTGATTGAGCATGG
TAGTAAGTACAAAACTCGTTACTTACACTTAAGTAAGATCTTAGTGAAGAAAGGGCAGAAGGTCTCTCGTGGTCAACGCA
TTGGCTTGTCAGGTAAGACTGGCCGTGTGACTGGTCCGCACCTTCACTACGAGTTGATCGAATACGGCCGTCCGGTGAAC
GCAATGCGCGCGAAGATCCCAATGGCAAGCTCAGTGCCTAAGAAAGAAATGGCGAGCTTCATTACGAACCGTAATGAAAT
GGACAAGCTGTTAAAAGATAAAGAAAAAGCCGTTCTATAA

Upstream 100 bases:

>100_bases
GCAACAGTAATGAATTTTTTTGTCTTCTGTAAAAAATAAGTGTTTTCTGCGCTAGATCTCGTAATTTACTAGTGATTTCT
TATGCGGGAATGCATAAGCT

Downstream 100 bases:

>100_bases
AATGCGAAAAAGACCAAACACTGTTTGGTCTTTTTTTTATGCGCTCTTCATTTGTTTGTCATTAATGATGCCAACCAGCT
CATTGACGCTGTGAGGTCTT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MSLVIKEIVIPVSTNEVTTRRLPNLTSRKALLLYSLPVLVAIGVSNSLKESSLTKTIALNLPETQVVENILDATTAEVVT
PPNFEYQIQAGDNLSTIFSQLGLGYSSLMKVMETDLNFLALDTLKPGNTLRFWRNESTGELEKMELQFSIADKVVYHRND
DGSYDFSDISIPGVWTQEPLVGVIRGSFSSSANRLGLSSAEISQVVNLLKEQVNFGKDLRAGDRFEVVRRSQSIDGVPTG
KNEIEAIKIYNRGREVTAYLHTDGQFYNAKGESLQRAFQRYPVSRGWRISSGFNPKRLHPVTGRVAPHNGTDWAVPTGTP
VEATGDGTVIMTRKHPYAGNYVVIEHGSKYKTRYLHLSKILVKKGQKVSRGQRIGLSGKTGRVTGPHLHYELIEYGRPVN
AMRAKIPMASSVPKKEMASFITNRNEMDKLLKDKEKAVL

Sequences:

>Translated_439_residues
MSLVIKEIVIPVSTNEVTTRRLPNLTSRKALLLYSLPVLVAIGVSNSLKESSLTKTIALNLPETQVVENILDATTAEVVT
PPNFEYQIQAGDNLSTIFSQLGLGYSSLMKVMETDLNFLALDTLKPGNTLRFWRNESTGELEKMELQFSIADKVVYHRND
DGSYDFSDISIPGVWTQEPLVGVIRGSFSSSANRLGLSSAEISQVVNLLKEQVNFGKDLRAGDRFEVVRRSQSIDGVPTG
KNEIEAIKIYNRGREVTAYLHTDGQFYNAKGESLQRAFQRYPVSRGWRISSGFNPKRLHPVTGRVAPHNGTDWAVPTGTP
VEATGDGTVIMTRKHPYAGNYVVIEHGSKYKTRYLHLSKILVKKGQKVSRGQRIGLSGKTGRVTGPHLHYELIEYGRPVN
AMRAKIPMASSVPKKEMASFITNRNEMDKLLKDKEKAVL
>Mature_438_residues
SLVIKEIVIPVSTNEVTTRRLPNLTSRKALLLYSLPVLVAIGVSNSLKESSLTKTIALNLPETQVVENILDATTAEVVTP
PNFEYQIQAGDNLSTIFSQLGLGYSSLMKVMETDLNFLALDTLKPGNTLRFWRNESTGELEKMELQFSIADKVVYHRNDD
GSYDFSDISIPGVWTQEPLVGVIRGSFSSSANRLGLSSAEISQVVNLLKEQVNFGKDLRAGDRFEVVRRSQSIDGVPTGK
NEIEAIKIYNRGREVTAYLHTDGQFYNAKGESLQRAFQRYPVSRGWRISSGFNPKRLHPVTGRVAPHNGTDWAVPTGTPV
EATGDGTVIMTRKHPYAGNYVVIEHGSKYKTRYLHLSKILVKKGQKVSRGQRIGLSGKTGRVTGPHLHYELIEYGRPVNA
MRAKIPMASSVPKKEMASFITNRNEMDKLLKDKEKAVL

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=343, Percent_Identity=39.3586005830904, Blast_Score=254, Evalue=7e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48779; Mature: 48648

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVIKEIVIPVSTNEVTTRRLPNLTSRKALLLYSLPVLVAIGVSNSLKESSLTKTIALN
CCEEEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCHHEEECCCCCHHHHHCCEEEEEC
LPETQVVENILDATTAEVVTPPNFEYQIQAGDNLSTIFSQLGLGYSSLMKVMETDLNFLA
CCHHHHHHHHHHCCHHHEECCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCCEEE
LDTLKPGNTLRFWRNESTGELEKMELQFSIADKVVYHRNDDGSYDFSDISIPGVWTQEPL
EECCCCCCCEEEECCCCCCCEEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCH
VGVIRGSFSSSANRLGLSSAEISQVVNLLKEQVNFGKDLRAGDRFEVVRRSQSIDGVPTG
HEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
KNEIEAIKIYNRGREVTAYLHTDGQFYNAKGESLQRAFQRYPVSRGWRISSGFNPKRLHP
CCCEEEEEEEECCCEEEEEEECCCEEECCCCHHHHHHHHHCCCCCCEEECCCCCCCEECC
VTGRVAPHNGTDWAVPTGTPVEATGDGTVIMTRKHPYAGNYVVIEHGSKYKTRYLHLSKI
CCCEECCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHH
LVKKGQKVSRGQRIGLSGKTGRVTGPHLHYELIEYGRPVNAMRAKIPMASSVPKKEMASF
HHHCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHH
ITNRNEMDKLLKDKEKAVL
HHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLVIKEIVIPVSTNEVTTRRLPNLTSRKALLLYSLPVLVAIGVSNSLKESSLTKTIALN
CEEEEEEEEECCCCCHHHHHCCCCCCCCEEEEECCCHHEEECCCCCHHHHHCCEEEEEC
LPETQVVENILDATTAEVVTPPNFEYQIQAGDNLSTIFSQLGLGYSSLMKVMETDLNFLA
CCHHHHHHHHHHCCHHHEECCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCCEEE
LDTLKPGNTLRFWRNESTGELEKMELQFSIADKVVYHRNDDGSYDFSDISIPGVWTQEPL
EECCCCCCCEEEECCCCCCCEEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCH
VGVIRGSFSSSANRLGLSSAEISQVVNLLKEQVNFGKDLRAGDRFEVVRRSQSIDGVPTG
HEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
KNEIEAIKIYNRGREVTAYLHTDGQFYNAKGESLQRAFQRYPVSRGWRISSGFNPKRLHP
CCCEEEEEEEECCCEEEEEEECCCEEECCCCHHHHHHHHHCCCCCCEEECCCCCCCEECC
VTGRVAPHNGTDWAVPTGTPVEATGDGTVIMTRKHPYAGNYVVIEHGSKYKTRYLHLSKI
CCCEECCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHH
LVKKGQKVSRGQRIGLSGKTGRVTGPHLHYELIEYGRPVNAMRAKIPMASSVPKKEMASF
HHHCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHH
ITNRNEMDKLLKDKEKAVL
HHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]