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The map label for this gene is ompU [H]

Identifier: 156977500

GI number: 156977500

Start: 1464071

End: 1465039

Strand: Direct

Name: ompU [H]

Synonym: VIBHAR_06287

Alternate gene names: 156977500

Gene position: 1464071-1465039 (Clockwise)

Preceding gene: 156977498

Following gene: 156977504

Centisome position: 66.43

GC content: 45.41

Gene sequence:

>969_bases
ATGAAAAAGGCAGCACTCACTACTGCAGTTCTAACAGCATTGGTATCATCACCATCTTTCGCAGCAACAGTTTACAAAGA
CGACGGCACTGAATTAAAAGTTGGTGGTCGTGTTGAATTTCGTGGTGACTTCATCGGTTCAGACGGCGCTGAAGTTGACG
GTACTATGGAAGACAAGTCACGAGCACGTCTAAACCTAAAAGGTAAAACAGATATCGGCAACGGCCTGTCAGCTTTCGGT
GTTTACGAAGCAGAACAAAAAACAGGTAAAAGCGAATTCAAAAACCGTTATATGTATGCAGGTGTAAGTGCCGATGCAGG
CGACTTCTCAGTTGGCCGCCAAGACATGGCCGCGGTAATCATTTCAGACATGACGGATATCACTGAGTTCTCAGGTGTTC
AGCAAGTAATTGATTCATCTTCTGACAAGCAAGACAGCGTTTTTGCTTACCGCGGTGAATTTGACGCTCTGCAAGTTCAA
GCGACTTACCAAGCAAACTCTGGTGACAGCCAAGACAAATACGGCATCTCTGGCCTTTACTCTCTGCCAATGGGTCTAGA
CCTAGGTCTTGCTTACTCTGGTGGCGATGTAGATAAAGATAACTCAGAAGATCAAATTCTAGGCGGTATCGCCTACTCTC
TTGAGAACCTATATCTGGCAGGCACCTACTCACAAGGCTCTCTGGATGACTCAGAAGACTTTACTGCTTACGAGCTGGTG
GCAAGCTACAAACTAGCAAGCAAGTTCACTGTTGCTGGTCTTTACACTTTCCAAGAAAATGATCCAAATGGCGCGGCGAA
ATACGACGCTGTTGACGGCTTTGAGCTAGTAGGTTATTACAAACTGAACAGCAACTTCCGTACTTACCTTTCTTACTACA
TGAACCAACTGGATGAAGAAAAGAATGCAGAAGGTAAAGTAACGGAAGGTGAAGACACACTGCGTCTAGGCGTACGTTAC
GACTTCTAA

Upstream 100 bases:

>100_bases
CTTAACAGAAATCTATCTTTCATTTTCGCGGTTTACCTTAAGCGTCATCGACACAAATCGAGCAAGTAAGCTCATCGATT
ACAACTAGGGTAATAAGAAA

Downstream 100 bases:

>100_bases
TAAAAACTTGTCCTAATAGCGAGTCTTTCGGCCGGCACTATTGTGTCGGCCTTTTTGATCGTATTCACTGCAGAGGCACT
GCCCTCTTTTAATGCACCAA

Product: hypothetical protein

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKKAALTTAVLTALVSSPSFAATVYKDDGTELKVGGRVEFRGDFIGSDGAEVDGTMEDKSRARLNLKGKTDIGNGLSAFG
VYEAEQKTGKSEFKNRYMYAGVSADAGDFSVGRQDMAAVIISDMTDITEFSGVQQVIDSSSDKQDSVFAYRGEFDALQVQ
ATYQANSGDSQDKYGISGLYSLPMGLDLGLAYSGGDVDKDNSEDQILGGIAYSLENLYLAGTYSQGSLDDSEDFTAYELV
ASYKLASKFTVAGLYTFQENDPNGAAKYDAVDGFELVGYYKLNSNFRTYLSYYMNQLDEEKNAEGKVTEGEDTLRLGVRY
DF

Sequences:

>Translated_322_residues
MKKAALTTAVLTALVSSPSFAATVYKDDGTELKVGGRVEFRGDFIGSDGAEVDGTMEDKSRARLNLKGKTDIGNGLSAFG
VYEAEQKTGKSEFKNRYMYAGVSADAGDFSVGRQDMAAVIISDMTDITEFSGVQQVIDSSSDKQDSVFAYRGEFDALQVQ
ATYQANSGDSQDKYGISGLYSLPMGLDLGLAYSGGDVDKDNSEDQILGGIAYSLENLYLAGTYSQGSLDDSEDFTAYELV
ASYKLASKFTVAGLYTFQENDPNGAAKYDAVDGFELVGYYKLNSNFRTYLSYYMNQLDEEKNAEGKVTEGEDTLRLGVRY
DF
>Mature_322_residues
MKKAALTTAVLTALVSSPSFAATVYKDDGTELKVGGRVEFRGDFIGSDGAEVDGTMEDKSRARLNLKGKTDIGNGLSAFG
VYEAEQKTGKSEFKNRYMYAGVSADAGDFSVGRQDMAAVIISDMTDITEFSGVQQVIDSSSDKQDSVFAYRGEFDALQVQ
ATYQANSGDSQDKYGISGLYSLPMGLDLGLAYSGGDVDKDNSEDQILGGIAYSLENLYLAGTYSQGSLDDSEDFTAYELV
ASYKLASKFTVAGLYTFQENDPNGAAKYDAVDGFELVGYYKLNSNFRTYLSYYMNQLDEEKNAEGKVTEGEDTLRLGVRY
DF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=362, Percent_Identity=26.7955801104972, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788544, Length=373, Percent_Identity=27.3458445040214, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787641, Length=361, Percent_Identity=27.9778393351801, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787160, Length=371, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 34953; Mature: 34953

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAALTTAVLTALVSSPSFAATVYKDDGTELKVGGRVEFRGDFIGSDGAEVDGTMEDKS
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCC
RARLNLKGKTDIGNGLSAFGVYEAEQKTGKSEFKNRYMYAGVSADAGDFSVGRQDMAAVI
CEEEEECCCCCCCCCCHHHEEEECHHHCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHH
ISDMTDITEFSGVQQVIDSSSDKQDSVFAYRGEFDALQVQATYQANSGDSQDKYGISGLY
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHE
SLPMGLDLGLAYSGGDVDKDNSEDQILGGIAYSLENLYLAGTYSQGSLDDSEDFTAYELV
ECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHH
ASYKLASKFTVAGLYTFQENDPNGAAKYDAVDGFELVGYYKLNSNFRTYLSYYMNQLDEE
HHHHHHCCEEEEEEEEEECCCCCCCEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
KNAEGKVTEGEDTLRLGVRYDF
CCCCCCEECCCCEEEEEEEECC
>Mature Secondary Structure
MKKAALTTAVLTALVSSPSFAATVYKDDGTELKVGGRVEFRGDFIGSDGAEVDGTMEDKS
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCC
RARLNLKGKTDIGNGLSAFGVYEAEQKTGKSEFKNRYMYAGVSADAGDFSVGRQDMAAVI
CEEEEECCCCCCCCCCHHHEEEECHHHCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHH
ISDMTDITEFSGVQQVIDSSSDKQDSVFAYRGEFDALQVQATYQANSGDSQDKYGISGLY
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHE
SLPMGLDLGLAYSGGDVDKDNSEDQILGGIAYSLENLYLAGTYSQGSLDDSEDFTAYELV
ECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHH
ASYKLASKFTVAGLYTFQENDPNGAAKYDAVDGFELVGYYKLNSNFRTYLSYYMNQLDEE
HHHHHHCCEEEEEEEEEECCCCCCCEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
KNAEGKVTEGEDTLRLGVRYDF
CCCCCCEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8945596 [H]