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The map label for this gene is yciR [C]

Identifier: 156977466

GI number: 156977466

Start: 1430960

End: 1433251

Strand: Direct

Name: yciR [C]

Synonym: VIBHAR_06253

Alternate gene names: 156977466

Gene position: 1430960-1433251 (Clockwise)

Preceding gene: 156977465

Following gene: 156977469

Centisome position: 64.93

GC content: 43.98

Gene sequence:

>2292_bases
ATGATCGGCATAAAGAAGAACATTTGGACGCTCTACATGACGCTGTTTGCGATAAGTGTGGGTTTGTTCTCTCTGTTTGG
TCATTATCATTACGAAGCAACTCTCGATAAGTACAAAGATAAGCAGCTCTTACAATTAGAGCTGTTTGCCTCCTCCGTCG
AGTCTTTGTTCAAAGGACAAGAAACGCTGTTGGAAGTAGTTGGGCACCAACTGATAGAGCAAAACGACTTCACTCGAACG
GCTTCCCTTCAAATGCGTCCCTTGCTTGATGATTTGATGGATATCCACCCTGTTATCGCCGCTTTTGGCCTGACTAACCC
TGAGGGGGATTATCTGGCCATCAGCTCTAATCTGGATTTACAAAAACTACAAAACCTAAGGCAAGATCCTCAAACCAAAG
GGACATTCGAAGCTGCACTTCAAGCCCAACACATGGTGGTTGGCAGAACCTATTTCATGCCCGCACTCGATTCATTAGTG
ATCCCTATCCGAAAGGCAATTCGAAATAAGAATGGGGACGTAATAGCAGTAATGACAGCGGGGTTTAACATGAACTCCTC
CTTAGTGTTCAGAAACGACGTGCATGCCAATAAACACAATCGCGTATCATTAGTTCGTGAAGACGGTTACCTTACTTTTA
CCTCCGCGGAGCAATCTAATCTATTCAGCTATACGCTCCCTGCAGATGGACAGATAAAAGCGATTGTCTTTGAGCAAGTC
GAGAAAAAGTACGACTGGAGCCGCGATACCGTAAAGAGCTTATCAAGTGCGGTAAACATTGTTGCCGATGACCCAAGAAT
CAATCAACTGGTGACACTTAAGTATTTACCTGATTACAAACTTTGGGCTTCCTCTTCAACCGATCTACGCTACATCCAAC
GTGGCTTCTTCGATCAGTTTGCTCTCTATTCCATCGTTTTTCTTTTTATCCAAGCAGGTTTCTATGCACTGGTTCGCTCA
ATTGCGAATAACGAGCTCGCAACGCGACAAAAACTGCTTTATCAGGCGCATCATGATCATTTAACACTACTGCCTAACCG
TGAATATCTGAGAGCACACATCACAAGATGGCTGAATGAAACTTCAGATCCATTTGCTTTGATGTTCATTGATATCGATA
ACTTCAAATCAGTAAACGACACACATGGCCATGAATTTGGTGACGAAGTGCTCAAGCAAATAGCGCTGCGCTTGAAGAGT
TTCGACAGTGAAGACCGATTGATTGTTAGAGAGGCGAGCGATGAATTCATCTTACTTGTCAATCAAACAGACGACAGCGT
AGTAAGGACGCTAGCAAGCGATCTTATTCATTACCTATCCGAACCTTACATCGTTCACGAAAACCAGTTCCTTCTCAGTT
CTAGCGTCGGTGTTGCGCTCTATCCTTCGCATGGCAAAAGTTTGGATGCGCTACTTCGCTCAGCGGATATCGCCATGTAT
CAAGCCAAAAAGGATCGTAACGCTTACAGTATTTTCGACCAACAAATGCAAGCGAAGCACCTCCATAAGATGAAGATAGA
GCAACGTTTAAGGCTCGCTATCGAAAGGCAAAGTTTGTTTTTGGTGTATCAGCCACAGTTGAACAGAGATGGTGAAATCT
ATGGCGTTGAGGCGCTTGTTCGCTGGCAGGACGAAGAGCTTGGATTTGTACCGCCAAACGAGTTCATTCCGGTCGCCGAG
AGCTCAGGTTTGATGGTAAGACTCGGAGAGTTAATCATAGAGAAAAGTTTCGTCGATATGGCACGTTTAACAGGGCGTGT
AAAACAGTCTATCCAGATGTCGATTAATATCTCGGTCAAACAATTTATCCAAGTCAACTTCATTGAGGATCTGGTGGCCA
TGATTGATAGACATAAGGTGAAACACAGTCGCATCACACTGGAAATTACTGAGAACCTGTTCATCGAGGACCTCGAAAAA
TTTGCGCCAATTTGCCAACGTCTACATTCGCTAGGCTTTAAGCTCTCTCTGGATGACTTCGGTACTGGCTACTCTTCCCT
TTCGATGCTTAAAGCATTGCCAATTGATGAAGTCAAAATCGATAAGAGCTTTGTCGATAACATTGAGAACGATGAAAAAG
CACTGAACATGGTGCAAAACATCATTGCGATTGGTAAAAACTTTGGGATGAAGGTGCTTGCTGAAGGTGTGGAAACTCGC
CATCAACGTGATCAACTTACTGCTTGCGGTTGTGATTTGATTCAAGGCTACTTCTATTCCAAACCATTGCCTTTTGAGCA
GTTGATTAGCTTTGCCGAAGAGAACCACAACGAAAAAGCCGTCGAACAATAA

Upstream 100 bases:

>100_bases
TGGTCTGGACAACCTGTCGGTGTACGACGGTTCTTGGACCGAATGGGGTGCAGACCATTCTCTACCTATCGAGCGTTAAG
ATCAGGAGCAGTAAAACGAT

Downstream 100 bases:

>100_bases
CGACGGCTTGATTTACGTAGTTATAACGTAAGGGACAGAGACTAGTTCTGCATTTCCTTATACATCACTTCGACTAACTC
TCCTTTCGGATCTCCTGACA

Product: sensory transduction protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MIGIKKNIWTLYMTLFAISVGLFSLFGHYHYEATLDKYKDKQLLQLELFASSVESLFKGQETLLEVVGHQLIEQNDFTRT
ASLQMRPLLDDLMDIHPVIAAFGLTNPEGDYLAISSNLDLQKLQNLRQDPQTKGTFEAALQAQHMVVGRTYFMPALDSLV
IPIRKAIRNKNGDVIAVMTAGFNMNSSLVFRNDVHANKHNRVSLVREDGYLTFTSAEQSNLFSYTLPADGQIKAIVFEQV
EKKYDWSRDTVKSLSSAVNIVADDPRINQLVTLKYLPDYKLWASSSTDLRYIQRGFFDQFALYSIVFLFIQAGFYALVRS
IANNELATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNETSDPFALMFIDIDNFKSVNDTHGHEFGDEVLKQIALRLKS
FDSEDRLIVREASDEFILLVNQTDDSVVRTLASDLIHYLSEPYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMY
QAKKDRNAYSIFDQQMQAKHLHKMKIEQRLRLAIERQSLFLVYQPQLNRDGEIYGVEALVRWQDEELGFVPPNEFIPVAE
SSGLMVRLGELIIEKSFVDMARLTGRVKQSIQMSINISVKQFIQVNFIEDLVAMIDRHKVKHSRITLEITENLFIEDLEK
FAPICQRLHSLGFKLSLDDFGTGYSSLSMLKALPIDEVKIDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETR
HQRDQLTACGCDLIQGYFYSKPLPFEQLISFAEENHNEKAVEQ

Sequences:

>Translated_763_residues
MIGIKKNIWTLYMTLFAISVGLFSLFGHYHYEATLDKYKDKQLLQLELFASSVESLFKGQETLLEVVGHQLIEQNDFTRT
ASLQMRPLLDDLMDIHPVIAAFGLTNPEGDYLAISSNLDLQKLQNLRQDPQTKGTFEAALQAQHMVVGRTYFMPALDSLV
IPIRKAIRNKNGDVIAVMTAGFNMNSSLVFRNDVHANKHNRVSLVREDGYLTFTSAEQSNLFSYTLPADGQIKAIVFEQV
EKKYDWSRDTVKSLSSAVNIVADDPRINQLVTLKYLPDYKLWASSSTDLRYIQRGFFDQFALYSIVFLFIQAGFYALVRS
IANNELATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNETSDPFALMFIDIDNFKSVNDTHGHEFGDEVLKQIALRLKS
FDSEDRLIVREASDEFILLVNQTDDSVVRTLASDLIHYLSEPYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMY
QAKKDRNAYSIFDQQMQAKHLHKMKIEQRLRLAIERQSLFLVYQPQLNRDGEIYGVEALVRWQDEELGFVPPNEFIPVAE
SSGLMVRLGELIIEKSFVDMARLTGRVKQSIQMSINISVKQFIQVNFIEDLVAMIDRHKVKHSRITLEITENLFIEDLEK
FAPICQRLHSLGFKLSLDDFGTGYSSLSMLKALPIDEVKIDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETR
HQRDQLTACGCDLIQGYFYSKPLPFEQLISFAEENHNEKAVEQ
>Mature_763_residues
MIGIKKNIWTLYMTLFAISVGLFSLFGHYHYEATLDKYKDKQLLQLELFASSVESLFKGQETLLEVVGHQLIEQNDFTRT
ASLQMRPLLDDLMDIHPVIAAFGLTNPEGDYLAISSNLDLQKLQNLRQDPQTKGTFEAALQAQHMVVGRTYFMPALDSLV
IPIRKAIRNKNGDVIAVMTAGFNMNSSLVFRNDVHANKHNRVSLVREDGYLTFTSAEQSNLFSYTLPADGQIKAIVFEQV
EKKYDWSRDTVKSLSSAVNIVADDPRINQLVTLKYLPDYKLWASSSTDLRYIQRGFFDQFALYSIVFLFIQAGFYALVRS
IANNELATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNETSDPFALMFIDIDNFKSVNDTHGHEFGDEVLKQIALRLKS
FDSEDRLIVREASDEFILLVNQTDDSVVRTLASDLIHYLSEPYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMY
QAKKDRNAYSIFDQQMQAKHLHKMKIEQRLRLAIERQSLFLVYQPQLNRDGEIYGVEALVRWQDEELGFVPPNEFIPVAE
SSGLMVRLGELIIEKSFVDMARLTGRVKQSIQMSINISVKQFIQVNFIEDLVAMIDRHKVKHSRITLEITENLFIEDLEK
FAPICQRLHSLGFKLSLDDFGTGYSSLSMLKALPIDEVKIDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETR
HQRDQLTACGCDLIQGYFYSKPLPFEQLISFAEENHNEKAVEQ

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=34.5882352941176, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=33.2552693208431, Blast_Score=235, Evalue=7e-63,
Organism=Escherichia coli, GI226510982, Length=387, Percent_Identity=28.4237726098191, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=32.9365079365079, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=38.9558232931727, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=32.5301204819277, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=34.412955465587, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=29.4573643410853, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=33.1983805668016, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.0411522633745, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082096, Length=478, Percent_Identity=24.6861924686192, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1788381, Length=434, Percent_Identity=24.4239631336406, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=37.8048780487805, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1789650, Length=388, Percent_Identity=21.1340206185567, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=34.7826086956522, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI87081977, Length=230, Percent_Identity=29.5652173913043, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=31.9526627218935, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=151, Percent_Identity=29.8013245033113, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=29.5180722891566, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1786584, Length=122, Percent_Identity=35.2459016393443, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=27.5449101796407, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87256; Mature: 87256

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGIKKNIWTLYMTLFAISVGLFSLFGHYHYEATLDKYKDKQLLQLELFASSVESLFKGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH
ETLLEVVGHQLIEQNDFTRTASLQMRPLLDDLMDIHPVIAAFGLTNPEGDYLAISSNLDL
HHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCH
QKLQNLRQDPQTKGTFEAALQAQHMVVGRTYFMPALDSLVIPIRKAIRNKNGDVIAVMTA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
GFNMNSSLVFRNDVHANKHNRVSLVREDGYLTFTSAEQSNLFSYTLPADGQIKAIVFEQV
CCCCCCCEEEECCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEECCCCCCEEHHHHHHH
EKKYDWSRDTVKSLSSAVNIVADDPRINQLVTLKYLPDYKLWASSSTDLRYIQRGFFDQF
HHHCCCCHHHHHHHHHHHEEEECCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHH
ALYSIVFLFIQAGFYALVRSIANNELATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCC
TSDPFALMFIDIDNFKSVNDTHGHEFGDEVLKQIALRLKSFDSEDRLIVREASDEFILLV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEE
NQTDDSVVRTLASDLIHYLSEPYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMY
ECCCHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHH
QAKKDRNAYSIFDQQMQAKHLHKMKIEQRLRLAIERQSLFLVYQPQLNRDGEIYGVEALV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCCCEEEEEEEE
RWQDEELGFVPPNEFIPVAESSGLMVRLGELIIEKSFVDMARLTGRVKQSIQMSINISVK
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHH
QFIQVNFIEDLVAMIDRHKVKHSRITLEITENLFIEDLEKFAPICQRLHSLGFKLSLDDF
HHHHHHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
GTGYSSLSMLKALPIDEVKIDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETR
CCCHHHHHHHHHCCCCCEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HQRDQLTACGCDLIQGYFYSKPLPFEQLISFAEENHNEKAVEQ
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIGIKKNIWTLYMTLFAISVGLFSLFGHYHYEATLDKYKDKQLLQLELFASSVESLFKGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCH
ETLLEVVGHQLIEQNDFTRTASLQMRPLLDDLMDIHPVIAAFGLTNPEGDYLAISSNLDL
HHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCH
QKLQNLRQDPQTKGTFEAALQAQHMVVGRTYFMPALDSLVIPIRKAIRNKNGDVIAVMTA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
GFNMNSSLVFRNDVHANKHNRVSLVREDGYLTFTSAEQSNLFSYTLPADGQIKAIVFEQV
CCCCCCCEEEECCCCCCCCCCEEEEEECCEEEEECCCCCCCEEEECCCCCCEEHHHHHHH
EKKYDWSRDTVKSLSSAVNIVADDPRINQLVTLKYLPDYKLWASSSTDLRYIQRGFFDQF
HHHCCCCHHHHHHHHHHHEEEECCCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHH
ALYSIVFLFIQAGFYALVRSIANNELATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCC
TSDPFALMFIDIDNFKSVNDTHGHEFGDEVLKQIALRLKSFDSEDRLIVREASDEFILLV
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEE
NQTDDSVVRTLASDLIHYLSEPYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMY
ECCCHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHH
QAKKDRNAYSIFDQQMQAKHLHKMKIEQRLRLAIERQSLFLVYQPQLNRDGEIYGVEALV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCCCCCCEEEEEEEE
RWQDEELGFVPPNEFIPVAESSGLMVRLGELIIEKSFVDMARLTGRVKQSIQMSINISVK
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHH
QFIQVNFIEDLVAMIDRHKVKHSRITLEITENLFIEDLEKFAPICQRLHSLGFKLSLDDF
HHHHHHHHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
GTGYSSLSMLKALPIDEVKIDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETR
CCCHHHHHHHHHCCCCCEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HQRDQLTACGCDLIQGYFYSKPLPFEQLISFAEENHNEKAVEQ
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]