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The map label for this gene is yafC [H]

Identifier: 156977413

GI number: 156977413

Start: 1378792

End: 1379700

Strand: Direct

Name: yafC [H]

Synonym: VIBHAR_06200

Alternate gene names: 156977413

Gene position: 1378792-1379700 (Clockwise)

Preceding gene: 156977396

Following gene: 156977417

Centisome position: 62.56

GC content: 40.7

Gene sequence:

>909_bases
ATGAAACTACAATTCGAAAATATTGTTTCGTTCGTAGCTGTAGTTGAGGAAGGTTCATTTAGCTCCGCAGCTCGTAAACT
TGGTAAATCACAATCTACCGTTAGCACTGCAATTCAAAATCTTGAGTCAGACTTAGGGTTCAGTTTATTTAATCGGCAAT
ATTCTAAAGTTTGGCTGAATGAAAAAGGGAAGCGCCTATTTCATTTGTCTACTCCTGTTGTATCAAAGTATCGAGAGTTG
ATGACAACTGCGCAGCAAATGCACATATCAGAACAAATTATTTTCCGTGTAGGTATTGATCCACTGGTGTTCAATAAAGA
AGTAAAGCAAACACTTCTAGAGTTTTCAGAAGCGTTTCCTAATGTAGATTTGCTCGTTGTCACAAAACCAAGTTTTGTTT
TGGGTAACTACATAAATGAAGGGAAGATCGATCTAGCCTTGGGTAACCCCTACCACAAAACAGGGAACGACTTTAATATT
GATGAGTTATTTTACGTCAACTGCTGGTGGGTAGCACACGAGGCCTTGACGAATATTGAAAGCAATACGTCACAACGGAT
CCTCTTAATGGATGGCAGCGAAGAGTTACTCAATTTATCTAACATAGCAGCCTATAATTTATGGCGTCTGGATGATTTGG
GAACCATCCTAGACCTATGTAAAGCCCAAAAGGGCATTGCTTTTTTGCCGGAATTTCTCATCGAGGAAAATGAAAAAGAG
GGCAAGCTAAGACGGATTAACGACCACCCAGATTTATTTGGTAAGCGAGTGACTGCTTCTCTATTCTGGCCAACACATTC
TGATTTTAGTTTGTTCAACCAATGGATAAAAGGGGAGCTAAGAAGCTGTGTAGCCCCTGAGGGATCCCCACATCTTTTCA
CCGGAACTCTGCCGCACTTATCGCTTTGA

Upstream 100 bases:

>100_bases
GTTTATAAAACCTGTTGAAATATGAGAATCATCACGCTATATATACGAACAATAAACCTAAAACTATAAATTACTTGCTT
TTAAAAAGGTTGGTCGAATC

Downstream 100 bases:

>100_bases
GGCCTCCTACGGCTAAGGCCAGATCCTTCACGCTAAATGAGTAAGCTTCTCTTCCTATCAACTCTTTACCGAGAAAAAAG
TAGGAAAGTACCCGGCGTGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKLQFENIVSFVAVVEEGSFSSAARKLGKSQSTVSTAIQNLESDLGFSLFNRQYSKVWLNEKGKRLFHLSTPVVSKYREL
MTTAQQMHISEQIIFRVGIDPLVFNKEVKQTLLEFSEAFPNVDLLVVTKPSFVLGNYINEGKIDLALGNPYHKTGNDFNI
DELFYVNCWWVAHEALTNIESNTSQRILLMDGSEELLNLSNIAAYNLWRLDDLGTILDLCKAQKGIAFLPEFLIEENEKE
GKLRRINDHPDLFGKRVTASLFWPTHSDFSLFNQWIKGELRSCVAPEGSPHLFTGTLPHLSL

Sequences:

>Translated_302_residues
MKLQFENIVSFVAVVEEGSFSSAARKLGKSQSTVSTAIQNLESDLGFSLFNRQYSKVWLNEKGKRLFHLSTPVVSKYREL
MTTAQQMHISEQIIFRVGIDPLVFNKEVKQTLLEFSEAFPNVDLLVVTKPSFVLGNYINEGKIDLALGNPYHKTGNDFNI
DELFYVNCWWVAHEALTNIESNTSQRILLMDGSEELLNLSNIAAYNLWRLDDLGTILDLCKAQKGIAFLPEFLIEENEKE
GKLRRINDHPDLFGKRVTASLFWPTHSDFSLFNQWIKGELRSCVAPEGSPHLFTGTLPHLSL
>Mature_302_residues
MKLQFENIVSFVAVVEEGSFSSAARKLGKSQSTVSTAIQNLESDLGFSLFNRQYSKVWLNEKGKRLFHLSTPVVSKYREL
MTTAQQMHISEQIIFRVGIDPLVFNKEVKQTLLEFSEAFPNVDLLVVTKPSFVLGNYINEGKIDLALGNPYHKTGNDFNI
DELFYVNCWWVAHEALTNIESNTSQRILLMDGSEELLNLSNIAAYNLWRLDDLGTILDLCKAQKGIAFLPEFLIEENEKE
GKLRRINDHPDLFGKRVTASLFWPTHSDFSLFNQWIKGELRSCVAPEGSPHLFTGTLPHLSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=147, Percent_Identity=31.9727891156463, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787949, Length=136, Percent_Identity=28.6764705882353, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786713, Length=247, Percent_Identity=27.5303643724696, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34304; Mature: 34304

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQFENIVSFVAVVEEGSFSSAARKLGKSQSTVSTAIQNLESDLGFSLFNRQYSKVWLN
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC
EKGKRLFHLSTPVVSKYRELMTTAQQMHISEQIIFRVGIDPLVFNKEVKQTLLEFSEAFP
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHEECHHHHHHHHHHHHHCC
NVDLLVVTKPSFVLGNYINEGKIDLALGNPYHKTGNDFNIDELFYVNCWWVAHEALTNIE
CCEEEEEECCCHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCC
SNTSQRILLMDGSEELLNLSNIAAYNLWRLDDLGTILDLCKAQKGIAFLPEFLIEENEKE
CCCCCEEEEEECCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
GKLRRINDHPDLFGKRVTASLFWPTHSDFSLFNQWIKGELRSCVAPEGSPHLFTGTLPHL
CCEEECCCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
SL
CC
>Mature Secondary Structure
MKLQFENIVSFVAVVEEGSFSSAARKLGKSQSTVSTAIQNLESDLGFSLFNRQYSKVWLN
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC
EKGKRLFHLSTPVVSKYRELMTTAQQMHISEQIIFRVGIDPLVFNKEVKQTLLEFSEAFP
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHEECHHHHHHHHHHHHHCC
NVDLLVVTKPSFVLGNYINEGKIDLALGNPYHKTGNDFNIDELFYVNCWWVAHEALTNIE
CCEEEEEECCCHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCC
SNTSQRILLMDGSEELLNLSNIAAYNLWRLDDLGTILDLCKAQKGIAFLPEFLIEENEKE
CCCCCEEEEEECCHHHHHHHHHHHHEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
GKLRRINDHPDLFGKRVTASLFWPTHSDFSLFNQWIKGELRSCVAPEGSPHLFTGTLPHL
CCEEECCCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
SL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]