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The map label for this gene is betI

Identifier: 156977394

GI number: 156977394

Start: 1361141

End: 1361740

Strand: Reverse

Name: betI

Synonym: VIBHAR_06181

Alternate gene names: 156977394

Gene position: 1361740-1361141 (Counterclockwise)

Preceding gene: 156977397

Following gene: 156977393

Centisome position: 61.78

GC content: 48.83

Gene sequence:

>600_bases
ATGCCCAAGGTTGGGATGCCTGAAATCAGAAAACCGCAGCTAGTCAAAGCGACGATGTCGGTCATTGACAGAGTTGGTTT
ACACGCCGCGAGTATCTCGTTGATCAGCAAAGAAGCAGGGGTATCAACGGGGATCATTAATCACTATTTCGGTGGTAAGC
ACGGTCTGTTAGAAGAGACAATGCGTGAGATCCTGCGCCAGCTTTCTGCCACCATCAAAGAGAACCTAAGCCAGCTGCCA
GCTGATGCGCATCATCAACGTATTAATGCCATCATCGACGGCAACTTTGTGGGTTTCCAAGCCGAGAACCAAGTGGCAAA
AACTTGGTTGGCGTTCTGGTCGTACTCCATGCATGACGCGCAGCTCAAACGTTTGCAACGAGTGAATGAACGACGCCTCC
TTTCTCACCTAAAAAAAGAATTAAAAGCTTTGCTGGATCAAGACCAAGCAGAGCTAGTAGCGCATGGTATTGCGTCACTG
ATTGATGGCATTTGGCTGCGCGGAACGCTCAACCCGCAAGGCATCGATGCCGAGAAAGCGCGCGTCATCATCAACGACTA
TCTCGATAAACAGCTCACGTTCTACTCAAAACTAAAATAA

Upstream 100 bases:

>100_bases
GTATCTGTCATTTTTTCTAGATAATTAGTTTGAGTTAGAACTAAATTTAAGGCATTTTATATTTAACTAACCGTTCAATT
AAAAATAACAAGGATGTAAA

Downstream 100 bases:

>100_bases
AGAGTCAAACCTTCAAATGGATATGAAAGCACACTACATCGATGGTGCCATGCACCTAGGATGCTCAGAAGAACACTTCA
CCACATACAATCCCGCCAAT

Product: transcriptional regulator BetI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MPKVGMPEIRKPQLVKATMSVIDRVGLHAASISLISKEAGVSTGIINHYFGGKHGLLEETMREILRQLSATIKENLSQLP
ADAHHQRINAIIDGNFVGFQAENQVAKTWLAFWSYSMHDAQLKRLQRVNERRLLSHLKKELKALLDQDQAELVAHGIASL
IDGIWLRGTLNPQGIDAEKARVIINDYLDKQLTFYSKLK

Sequences:

>Translated_199_residues
MPKVGMPEIRKPQLVKATMSVIDRVGLHAASISLISKEAGVSTGIINHYFGGKHGLLEETMREILRQLSATIKENLSQLP
ADAHHQRINAIIDGNFVGFQAENQVAKTWLAFWSYSMHDAQLKRLQRVNERRLLSHLKKELKALLDQDQAELVAHGIASL
IDGIWLRGTLNPQGIDAEKARVIINDYLDKQLTFYSKLK
>Mature_198_residues
PKVGMPEIRKPQLVKATMSVIDRVGLHAASISLISKEAGVSTGIINHYFGGKHGLLEETMREILRQLSATIKENLSQLPA
DAHHQRINAIIDGNFVGFQAENQVAKTWLAFWSYSMHDAQLKRLQRVNERRLLSHLKKELKALLDQDQAELVAHGIASLI
DGIWLRGTLNPQGIDAEKARVIINDYLDKQLTFYSKLK

Specific function: Repressor involved in choline regulation of the bet genes

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1786505, Length=192, Percent_Identity=45.8333333333333, Blast_Score=179, Evalue=8e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): BETI_VIBHB (A7N212)

Other databases:

- EMBL:   CP000790
- RefSeq:   YP_001448300.1
- ProteinModelPortal:   A7N212
- STRING:   A7N212
- GeneID:   5558346
- GenomeReviews:   CP000790_GR
- KEGG:   vha:VIBHAR_06181
- NMPDR:   fig|338187.4.peg.3649
- eggNOG:   COG1309
- HOGENOM:   HBG684746
- OMA:   INHYFGG
- ProtClustDB:   PRK00767
- HAMAP:   MF_00768
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR017757
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- TIGRFAMs:   TIGR03384

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 22384; Mature: 22253

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKVGMPEIRKPQLVKATMSVIDRVGLHAASISLISKEAGVSTGIINHYFGGKHGLLEET
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHH
MREILRQLSATIKENLSQLPADAHHQRINAIIDGNFVGFQAENQVAKTWLAFWSYSMHDA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCHH
QLKRLQRVNERRLLSHLKKELKALLDQDQAELVAHGIASLIDGIWLRGTLNPQGIDAEKA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHH
RVIINDYLDKQLTFYSKLK
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKVGMPEIRKPQLVKATMSVIDRVGLHAASISLISKEAGVSTGIINHYFGGKHGLLEET
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHH
MREILRQLSATIKENLSQLPADAHHQRINAIIDGNFVGFQAENQVAKTWLAFWSYSMHDA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCCHH
QLKRLQRVNERRLLSHLKKELKALLDQDQAELVAHGIASLIDGIWLRGTLNPQGIDAEKA
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHH
RVIINDYLDKQLTFYSKLK
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA