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The map label for this gene is ybbK [C]

Identifier: 156977387

GI number: 156977387

Start: 1353053

End: 1353844

Strand: Direct

Name: ybbK [C]

Synonym: VIBHAR_06174

Alternate gene names: 156977387

Gene position: 1353053-1353844 (Clockwise)

Preceding gene: 156977386

Following gene: 156977388

Centisome position: 61.39

GC content: 47.73

Gene sequence:

>792_bases
ATGATGCTTTACACTGTTGCCGTTATCATCGTTTTATTGTTTGCACTGGCAACGCAAATGTTCAAGGTGCTGCGTGAGTA
CGAGCGCGGCGTGGTGTTCTTTCTCGGTCGCTTCCAAGAAGTGAAAGGACCTGGTTTAATCATCTTGATCCCCTTCATTC
AACAAATGGTTCGCGTCGACCTTCGTACCATTGTTTTGGATGTTCCGACTCAAGATTTAATCACCCGTGACAATGTATCG
GTCAGAGTCAATGCCGTGGTTTACTTCCGAGTTGTCGACCCACAAATGGCGATCAACAACATTGAAAGTTATAGCGACGC
CACTAGCCAGCTAGCACAAACAACGCTGCGTTCGGTGCTAGGCCAACACGAACTGGATGAATTGCTGTCAGAACGTGAGC
GTCTCAATAAAGACCTCCAAGCCATTCTTGATCAGCAAACTGACGATTGGGGAATCAAGATAGCAACGGTTGAAGTGAAA
CATGTCGATCTTAACGACAGCATGGTGCGCGCTCTTGCCCGCCAAGCCGAAGCAGAACGTAACCGCCGAGCGAAGATCAT
CCACGCAACCGGTGAGTTAGAAGCGTCTAACAAATTGAAAGAAGCAGCAGAAATGCTCAATGAAGCGCCCAATGCGTTGC
AACTTCGATACATGCAAACGCTCACTGAAATCACTACAGACAAAACGTCAACCATCATCTTCCCGCTGCCAATCAACCTT
GTCGAAGCGGTTTCCGACATCGCCAAAGCTGTGAAGAACAACCAAGGCGAAAAAGAGGAAGAAAAAGAGTAA

Upstream 100 bases:

>100_bases
ACAGAAATTGAAACAAGGTGACCACGTGACTGTGGTGAAAATTAAAGGGTTGACCCTAACCGTGAAACCCAGTGACCGCC
CTAAGGAATAGGAGGCGCTT

Downstream 100 bases:

>100_bases
ACGTGAGCGAAAAGTGAAAGGGAGCAAAATGACTCCCTTTCTTTTTAATTTTGCTCTGGGCACCTTTTGATTTTCAATAA
AAAATAGAAAGTGATTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MMLYTVAVIIVLLFALATQMFKVLREYERGVVFFLGRFQEVKGPGLIILIPFIQQMVRVDLRTIVLDVPTQDLITRDNVS
VRVNAVVYFRVVDPQMAINNIESYSDATSQLAQTTLRSVLGQHELDELLSERERLNKDLQAILDQQTDDWGIKIATVEVK
HVDLNDSMVRALARQAEAERNRRAKIIHATGELEASNKLKEAAEMLNEAPNALQLRYMQTLTEITTDKTSTIIFPLPINL
VEAVSDIAKAVKNNQGEKEEEKE

Sequences:

>Translated_263_residues
MMLYTVAVIIVLLFALATQMFKVLREYERGVVFFLGRFQEVKGPGLIILIPFIQQMVRVDLRTIVLDVPTQDLITRDNVS
VRVNAVVYFRVVDPQMAINNIESYSDATSQLAQTTLRSVLGQHELDELLSERERLNKDLQAILDQQTDDWGIKIATVEVK
HVDLNDSMVRALARQAEAERNRRAKIIHATGELEASNKLKEAAEMLNEAPNALQLRYMQTLTEITTDKTSTIIFPLPINL
VEAVSDIAKAVKNNQGEKEEEKE
>Mature_263_residues
MMLYTVAVIIVLLFALATQMFKVLREYERGVVFFLGRFQEVKGPGLIILIPFIQQMVRVDLRTIVLDVPTQDLITRDNVS
VRVNAVVYFRVVDPQMAINNIESYSDATSQLAQTTLRSVLGQHELDELLSERERLNKDLQAILDQQTDDWGIKIATVEVK
HVDLNDSMVRALARQAEAERNRRAKIIHATGELEASNKLKEAAEMLNEAPNALQLRYMQTLTEITTDKTSTIIFPLPINL
VEAVSDIAKAVKNNQGEKEEEKE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=251, Percent_Identity=44.2231075697211, Blast_Score=214, Evalue=5e-56,
Organism=Homo sapiens, GI21686995, Length=251, Percent_Identity=44.2231075697211, Blast_Score=214, Evalue=6e-56,
Organism=Homo sapiens, GI38016911, Length=237, Percent_Identity=46.8354430379747, Blast_Score=209, Evalue=2e-54,
Organism=Homo sapiens, GI7657615, Length=247, Percent_Identity=36.4372469635627, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI7305503, Length=176, Percent_Identity=37.5, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI20149563, Length=159, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI38016907, Length=60, Percent_Identity=55, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1786697, Length=191, Percent_Identity=31.9371727748691, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1790616, Length=140, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17569493, Length=245, Percent_Identity=45.7142857142857, Blast_Score=220, Evalue=6e-58,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=46.6666666666667, Blast_Score=218, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI25153583, Length=246, Percent_Identity=46.3414634146341, Blast_Score=207, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI71987612, Length=246, Percent_Identity=46.3414634146341, Blast_Score=207, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI71987621, Length=246, Percent_Identity=46.3414634146341, Blast_Score=206, Evalue=7e-54,
Organism=Caenorhabditis elegans, GI17569499, Length=244, Percent_Identity=43.8524590163934, Blast_Score=196, Evalue=9e-51,
Organism=Caenorhabditis elegans, GI17569497, Length=245, Percent_Identity=41.2244897959184, Blast_Score=195, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI193210507, Length=243, Percent_Identity=43.2098765432099, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17570161, Length=243, Percent_Identity=43.2098765432099, Blast_Score=191, Evalue=5e-49,
Organism=Caenorhabditis elegans, GI17570459, Length=245, Percent_Identity=42.4489795918367, Blast_Score=189, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=223, Percent_Identity=44.3946188340807, Blast_Score=177, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI32566490, Length=209, Percent_Identity=45.933014354067, Blast_Score=176, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI71989955, Length=177, Percent_Identity=46.3276836158192, Blast_Score=141, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI71989963, Length=114, Percent_Identity=49.1228070175439, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI32564147, Length=173, Percent_Identity=36.9942196531792, Blast_Score=113, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=173, Percent_Identity=27.1676300578035, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45556022, Length=237, Percent_Identity=48.1012658227848, Blast_Score=216, Evalue=1e-56,
Organism=Drosophila melanogaster, GI18860517, Length=247, Percent_Identity=46.1538461538462, Blast_Score=212, Evalue=2e-55,
Organism=Drosophila melanogaster, GI24657857, Length=243, Percent_Identity=48.559670781893, Blast_Score=209, Evalue=1e-54,
Organism=Drosophila melanogaster, GI62484448, Length=243, Percent_Identity=48.559670781893, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI281365664, Length=243, Percent_Identity=48.559670781893, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI62484274, Length=243, Percent_Identity=48.559670781893, Blast_Score=208, Evalue=2e-54,
Organism=Drosophila melanogaster, GI28573263, Length=244, Percent_Identity=40.5737704918033, Blast_Score=190, Evalue=7e-49,
Organism=Drosophila melanogaster, GI21356845, Length=241, Percent_Identity=37.344398340249, Blast_Score=181, Evalue=5e-46,
Organism=Drosophila melanogaster, GI281361631, Length=236, Percent_Identity=38.5593220338983, Blast_Score=176, Evalue=1e-44,
Organism=Drosophila melanogaster, GI281361633, Length=236, Percent_Identity=38.5593220338983, Blast_Score=176, Evalue=1e-44,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=39.5604395604396, Blast_Score=139, Evalue=3e-33,
Organism=Drosophila melanogaster, GI45550506, Length=176, Percent_Identity=37.5, Blast_Score=120, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 29806; Mature: 29806

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLYTVAVIIVLLFALATQMFKVLREYERGVVFFLGRFQEVKGPGLIILIPFIQQMVRVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCCCCCEEEEHHHHHHHHHHH
LRTIVLDVPTQDLITRDNVSVRVNAVVYFRVVDPQMAINNIESYSDATSQLAQTTLRSVL
HHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQHELDELLSERERLNKDLQAILDQQTDDWGIKIATVEVKHVDLNDSMVRALARQAEAER
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH
NRRAKIIHATGELEASNKLKEAAEMLNEAPNALQLRYMQTLTEITTDKTSTIIFPLPINL
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
VEAVSDIAKAVKNNQGEKEEEKE
HHHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure
MMLYTVAVIIVLLFALATQMFKVLREYERGVVFFLGRFQEVKGPGLIILIPFIQQMVRVD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCCCCCEEEEHHHHHHHHHHH
LRTIVLDVPTQDLITRDNVSVRVNAVVYFRVVDPQMAINNIESYSDATSQLAQTTLRSVL
HHHHEEECCCHHHHCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQHELDELLSERERLNKDLQAILDQQTDDWGIKIATVEVKHVDLNDSMVRALARQAEAER
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHH
NRRAKIIHATGELEASNKLKEAAEMLNEAPNALQLRYMQTLTEITTDKTSTIIFPLPINL
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
VEAVSDIAKAVKNNQGEKEEEKE
HHHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]