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The map label for this gene is yddU [C]

Identifier: 156977383

GI number: 156977383

Start: 1348404

End: 1349546

Strand: Direct

Name: yddU [C]

Synonym: VIBHAR_06170

Alternate gene names: 156977383

Gene position: 1348404-1349546 (Clockwise)

Preceding gene: 156977382

Following gene: 156977384

Centisome position: 61.18

GC content: 45.58

Gene sequence:

>1143_bases
ATGAACGTTTTGATTGTAGAAGATGATCGATTACAAGCAACCAATCTTAAGATTTTGCTCAATCGTCTATTTGAAGGCAC
GATTACCGTCGTCCATCGAGGGTCAGAAGTCGCGACCGTTTGCGAGGCCCAACCAATCGATGTGATGTTCTGCGATATTG
ATTTACCAGATATCAATGGGGTGAACCTACTTTCAACCCTTGCAGAAAGCTCGCGTCCAAAAGGCGTGGTGATTTTGAGT
GCGATGACCCAAGACGTGCTCGAAATTACCTACAACATGTGCTTGTCTGCGGGCTACGGGTTTGTTCGCGCATTAACTAA
ACCCATTTCTAATCAGCAACTCACTCAGATCTTCGGTGAGTTCAAACAATACTTATCGCAAGAGCAATTCGTGAGCTTGC
CTGTGTTAATGAATGACGACGAGATTGACACTGCCTTCAATGAGGGCAGGTTTATCAATTATTACCAACCACAATACTCA
ACGTCGGATAACCAACTGATTGGAGTCGAAGCATTAGTACGTTGTCGTCACCCCGAGCACGGCATTATTGCACCTGCGCA
GTTTATTACTGAGATTCAGGTTCGTAACGAGTTGGATAAACTGTTCTGGATTGTGCTAGAGAACGCGCTTCAAGACATGT
CCGCACTGAAAGTAGACATCAACTTATCAGTCAACATGAACCAAAAGACGCTGAAGCAACCTATGAGTGAGCGACTATTT
GCCTTGTGCGAACAATACCAAATAGCACCTGAACGCATCACACTTGAACTGACCGAAGACGAAGTGTACGACTGCAGCGT
CACGTCGCTAGCCAACCTCGCCAACTTACGTTTAAGAGGCGTTGGCTTAGCCATTGACGACTTTGGGACCGGTTACTCGT
CCCTGAGCCAGTTAGCAACGCTGCCTTATACAGAGTTAAAGATTGACCGCCAATTTATCAAAGATGCATTAACCAACTTC
AAGAGCCAACAGCTCACTATTTCGAGCCTACACCTAGCAAAGTCATTAGGACTTAAATCGGTGGCAGAAGGTGTAGAAGA
TAATGAAACATTGGCGTATTTGCGCGAACTTGGCGTGGAACTTTACCAAGGATTTGTTCGCTGCCGCCCTATCCCCTTTG
AACAATTGGAAACGTTGATCTAA

Upstream 100 bases:

>100_bases
CAGCGAACAAGAAATTCAGGCTCGCACGGCACTTATCAACGAATTAGAAACCATCGTCAGCACGACACAGCAGTGGCTGA
ATATGAATGGGAGCAATTAA

Downstream 100 bases:

>100_bases
TTCGAACGTTGCGGCTGTTTGCTATCAGCCGCAACGCTCATTTTCTGAGTCCTTTTTAAATGAACACCAAATCTTTCTCA
CAGTACAATGTGTTAATTGT

Product: sensory transduction protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MNVLIVEDDRLQATNLKILLNRLFEGTITVVHRGSEVATVCEAQPIDVMFCDIDLPDINGVNLLSTLAESSRPKGVVILS
AMTQDVLEITYNMCLSAGYGFVRALTKPISNQQLTQIFGEFKQYLSQEQFVSLPVLMNDDEIDTAFNEGRFINYYQPQYS
TSDNQLIGVEALVRCRHPEHGIIAPAQFITEIQVRNELDKLFWIVLENALQDMSALKVDINLSVNMNQKTLKQPMSERLF
ALCEQYQIAPERITLELTEDEVYDCSVTSLANLANLRLRGVGLAIDDFGTGYSSLSQLATLPYTELKIDRQFIKDALTNF
KSQQLTISSLHLAKSLGLKSVAEGVEDNETLAYLRELGVELYQGFVRCRPIPFEQLETLI

Sequences:

>Translated_380_residues
MNVLIVEDDRLQATNLKILLNRLFEGTITVVHRGSEVATVCEAQPIDVMFCDIDLPDINGVNLLSTLAESSRPKGVVILS
AMTQDVLEITYNMCLSAGYGFVRALTKPISNQQLTQIFGEFKQYLSQEQFVSLPVLMNDDEIDTAFNEGRFINYYQPQYS
TSDNQLIGVEALVRCRHPEHGIIAPAQFITEIQVRNELDKLFWIVLENALQDMSALKVDINLSVNMNQKTLKQPMSERLF
ALCEQYQIAPERITLELTEDEVYDCSVTSLANLANLRLRGVGLAIDDFGTGYSSLSQLATLPYTELKIDRQFIKDALTNF
KSQQLTISSLHLAKSLGLKSVAEGVEDNETLAYLRELGVELYQGFVRCRPIPFEQLETLI
>Mature_380_residues
MNVLIVEDDRLQATNLKILLNRLFEGTITVVHRGSEVATVCEAQPIDVMFCDIDLPDINGVNLLSTLAESSRPKGVVILS
AMTQDVLEITYNMCLSAGYGFVRALTKPISNQQLTQIFGEFKQYLSQEQFVSLPVLMNDDEIDTAFNEGRFINYYQPQYS
TSDNQLIGVEALVRCRHPEHGIIAPAQFITEIQVRNELDKLFWIVLENALQDMSALKVDINLSVNMNQKTLKQPMSERLF
ALCEQYQIAPERITLELTEDEVYDCSVTSLANLANLRLRGVGLAIDDFGTGYSSLSQLATLPYTELKIDRQFIKDALTNF
KSQQLTISSLHLAKSLGLKSVAEGVEDNETLAYLRELGVELYQGFVRCRPIPFEQLETLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=232, Percent_Identity=32.7586206896552, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1790496, Length=223, Percent_Identity=33.6322869955157, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI226510982, Length=249, Percent_Identity=32.5301204819277, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081743, Length=225, Percent_Identity=33.3333333333333, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787541, Length=241, Percent_Identity=31.5352697095436, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87082096, Length=238, Percent_Identity=33.6134453781513, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=33.6065573770492, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=28.6307053941909, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=28.0334728033473, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=30.7053941908714, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=26.7206477732794, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788849, Length=214, Percent_Identity=30.8411214953271, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 42762; Mature: 42762

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLIVEDDRLQATNLKILLNRLFEGTITVVHRGSEVATVCEAQPIDVMFCDIDLPDING
CEEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCCEEEHCCCCCCEEEEEECCCCCCCC
VNLLSTLAESSRPKGVVILSAMTQDVLEITYNMCLSAGYGFVRALTKPISNQQLTQIFGE
HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHH
FKQYLSQEQFVSLPVLMNDDEIDTAFNEGRFINYYQPQYSTSDNQLIGVEALVRCRHPEH
HHHHHCHHHHEECCEEECCCCHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHCCCCCC
GIIAPAQFITEIQVRNELDKLFWIVLENALQDMSALKVDINLSVNMNQKTLKQPMSERLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHH
ALCEQYQIAPERITLELTEDEVYDCSVTSLANLANLRLRGVGLAIDDFGTGYSSLSQLAT
HHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHCEEEEEEEEEECCCCCHHHHHHHHC
LPYTELKIDRQFIKDALTNFKSQQLTISSLHLAKSLGLKSVAEGVEDNETLAYLRELGVE
CCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHH
LYQGFVRCRPIPFEQLETLI
HHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MNVLIVEDDRLQATNLKILLNRLFEGTITVVHRGSEVATVCEAQPIDVMFCDIDLPDING
CEEEEEECCCCCHHHHHHHHHHHHCCEEEEEECCCCEEEHCCCCCCEEEEEECCCCCCCC
VNLLSTLAESSRPKGVVILSAMTQDVLEITYNMCLSAGYGFVRALTKPISNQQLTQIFGE
HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHH
FKQYLSQEQFVSLPVLMNDDEIDTAFNEGRFINYYQPQYSTSDNQLIGVEALVRCRHPEH
HHHHHCHHHHEECCEEECCCCHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHCCCCCC
GIIAPAQFITEIQVRNELDKLFWIVLENALQDMSALKVDINLSVNMNQKTLKQPMSERLF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHH
ALCEQYQIAPERITLELTEDEVYDCSVTSLANLANLRLRGVGLAIDDFGTGYSSLSQLAT
HHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHCEEEEEEEEEECCCCCHHHHHHHHC
LPYTELKIDRQFIKDALTNFKSQQLTISSLHLAKSLGLKSVAEGVEDNETLAYLRELGVE
CCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHH
LYQGFVRCRPIPFEQLETLI
HHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]