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The map label for this gene is yqjA [H]

Identifier: 156977370

GI number: 156977370

Start: 1333943

End: 1334620

Strand: Reverse

Name: yqjA [H]

Synonym: VIBHAR_06156

Alternate gene names: 156977370

Gene position: 1334620-1333943 (Counterclockwise)

Preceding gene: 156977371

Following gene: 156977368

Centisome position: 60.55

GC content: 47.35

Gene sequence:

>678_bases
ATGTTTGATTCAATTACGCAGGTGCTGTTTGCTTTGTGGCACCAAGACTTTACTGCACTGATGGCACCGGGTAGTGCAGG
TCTTATCTACTTTGTAGTGGGTGCGCTTATTTTTCTCGAGAGTGGTTTTATTCCCGCGGCACCTTTCCCTTGTGACAGTG
TTGTTGTGCTTTCTGGCACTTTAGCAGCGGTGGGCGTACTAGACCCAGTGATGATCATGTTGGTGATCGTGGTGAGTGCG
GCAATGGGCAGTTGGGCTGCGTACCTACAAGGTAAATGGTTAAACCGTTTACCAAAGGTGCAGGGGTGGGTAAATGCAGT
GCCAGCAAAACGCTTGGAGCAAGTTGACATGTTACTTGGTAAGCATGGTTTAATTGCATTGTTCTGCGCGCGTTTTATTC
CTGTTGTTCGCTCTTTGCTGCCATTAATGATGGGCTTGCGCGTTAATCGCGTGAGTAAGTTCCATTACTTCGCATGGTTG
AGTGCAATTCTATGGACTCTGCTGCTTTGTGGTTTAGGTTTATTATTGCCTCTACTGCCAGAGAAGCTTAACAAGATTGT
GACCATGGGATTGATGGCTGCACCGGTGATTACCCTGACTATTGCCATTATGAGCTTTGTATTGGTGAAGGTGCGTAAGG
CTTGGGGTAAATCGAAAACCACGCCGCAATTGCCATAG

Upstream 100 bases:

>100_bases
GGGCAGGGCAAGAGTCCAACCTGATCTATCGCTTTATTCATGCGCGGTAATTCCTATTCATTAATTTTCGAAATTTGATT
GTGATGTTTAGGAGTTTGTT

Downstream 100 bases:

>100_bases
TCGTATAAACCTGAAGCTCGAAAAGCAAAAAAGGCGCGATGATCGCGCCTTTTTCGTTCTCTACGTAATTTGAATTGAGC
GTGAATCAGTAGCCATTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MFDSITQVLFALWHQDFTALMAPGSAGLIYFVVGALIFLESGFIPAAPFPCDSVVVLSGTLAAVGVLDPVMIMLVIVVSA
AMGSWAAYLQGKWLNRLPKVQGWVNAVPAKRLEQVDMLLGKHGLIALFCARFIPVVRSLLPLMMGLRVNRVSKFHYFAWL
SAILWTLLLCGLGLLLPLLPEKLNKIVTMGLMAAPVITLTIAIMSFVLVKVRKAWGKSKTTPQLP

Sequences:

>Translated_225_residues
MFDSITQVLFALWHQDFTALMAPGSAGLIYFVVGALIFLESGFIPAAPFPCDSVVVLSGTLAAVGVLDPVMIMLVIVVSA
AMGSWAAYLQGKWLNRLPKVQGWVNAVPAKRLEQVDMLLGKHGLIALFCARFIPVVRSLLPLMMGLRVNRVSKFHYFAWL
SAILWTLLLCGLGLLLPLLPEKLNKIVTMGLMAAPVITLTIAIMSFVLVKVRKAWGKSKTTPQLP
>Mature_225_residues
MFDSITQVLFALWHQDFTALMAPGSAGLIYFVVGALIFLESGFIPAAPFPCDSVVVLSGTLAAVGVLDPVMIMLVIVVSA
AMGSWAAYLQGKWLNRLPKVQGWVNAVPAKRLEQVDMLLGKHGLIALFCARFIPVVRSLLPLMMGLRVNRVSKFHYFAWL
SAILWTLLLCGLGLLLPLLPEKLNKIVTMGLMAAPVITLTIAIMSFVLVKVRKAWGKSKTTPQLP

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=178, Percent_Identity=42.1348314606742, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1789384, Length=216, Percent_Identity=34.7222222222222, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24544; Mature: 24544

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSITQVLFALWHQDFTALMAPGSAGLIYFVVGALIFLESGFIPAAPFPCDSVVVLSGT
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LAAVGVLDPVMIMLVIVVSAAMGSWAAYLQGKWLNRLPKVQGWVNAVPAKRLEQVDMLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
KHGLIALFCARFIPVVRSLLPLMMGLRVNRVSKFHYFAWLSAILWTLLLCGLGLLLPLLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKLNKIVTMGLMAAPVITLTIAIMSFVLVKVRKAWGKSKTTPQLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFDSITQVLFALWHQDFTALMAPGSAGLIYFVVGALIFLESGFIPAAPFPCDSVVVLSGT
CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
LAAVGVLDPVMIMLVIVVSAAMGSWAAYLQGKWLNRLPKVQGWVNAVPAKRLEQVDMLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
KHGLIALFCARFIPVVRSLLPLMMGLRVNRVSKFHYFAWLSAILWTLLLCGLGLLLPLLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKLNKIVTMGLMAAPVITLTIAIMSFVLVKVRKAWGKSKTTPQLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]