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The map label for this gene is rbsC [H]

Identifier: 156977358

GI number: 156977358

Start: 1322328

End: 1323311

Strand: Reverse

Name: rbsC [H]

Synonym: VIBHAR_06144

Alternate gene names: 156977358

Gene position: 1323311-1322328 (Counterclockwise)

Preceding gene: 156977359

Following gene: 156977357

Centisome position: 60.04

GC content: 47.56

Gene sequence:

>984_bases
ATGAGTACTAATACCATGAGCAAACCAAACGAAACGGGCAGCAAGAAGCTGTTCACCAAAGAATGGCTGATTGAGCAAAA
GTCACTGATCGCATTGATTTTCTTGATTGTTGTTGTGTCATTTTTGAACCCAAACTTTTTTACGGTAGACAACATTCTTA
ACATCCTTCGTCAAACCTCAGTCAACGCGATCATTGCAGTTGGTATGACGCTGGTTATTTTGACTGCTGGCATTGACCTA
AGCGTAGGATCTGTACTTGCACTATGTGGTGCCTTCGCGGCGAGCATGATTGCACTAGAAGTGCCAGTGCTTATCGCGGT
TCCAACAGCATTGTTCGCTGGTGCAGCTCTAGGAGCGATCAGCGGTATCATTATTGCCAAAGGTAAGGTTCAAGCCTTTA
TCGCAACGCTGGTTACCATGACGTTACTACGCGGCGTAACAATGGTTTACACAGACGGTCGTCCTATCTCTACGGGCTTT
ACTGACACAGCAGACGCATTTGCATGGTTCGGTACAGGTTACGCTCTTGGTATCCCAGTTCCAGTTTGGTTGATGGTGAT
TGTCTTTGCGGCAGCTTGGTACCTACTGAACCACACTCGCTTTGGTCGCTACGTTTACGCACTTGGTGGCAACGAATCAG
CAACGCGACTTTCTGGTATCAATGTTGACCGTGTGAAAATTGGTGTATACGCCATTTGCGGTATGTTGGCAGCGCTTGCA
GGCATTATCGTGACGTCTCGTCTGTCTTCAGCACAGCCAACTGCGGGTATGGGCTACGAGCTAGACGCTATCGCAGCGGT
TGTTCTTGGCGGTACTAGCTTGATGGGCGGTAAAGGTCGCATCATGGGTACCTTGATTGGTGCTCTAATCATCGGCTTCT
TGAACAACGCGCTGAACCTACTCGATGTTTCTTCTTACTACCAAATGATTGCGAAAGCAGTGGTTATCTTGCTAGCGGTA
CTGGTAGACAACAAAAACAAGTAA

Upstream 100 bases:

>100_bases
TGCACGAAGGTCGCATTACTGGCGAATTCGATGCGAAAGACGCCGACCAAGAAACACTACTCGCTTGTGCCGTAGGCAAG
AAGATCAATGAGGAAGCAGC

Downstream 100 bases:

>100_bases
TCCATAACAACTAATACATTAAAGCTAAATCCTGAATACAAGCCGAGCCAGAGGACGTGTGCTGGCTCACCCTACACAAA
GGACTAGAACGATGAAAAAA

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSTNTMSKPNETGSKKLFTKEWLIEQKSLIALIFLIVVVSFLNPNFFTVDNILNILRQTSVNAIIAVGMTLVILTAGIDL
SVGSVLALCGAFAASMIALEVPVLIAVPTALFAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGF
TDTADAFAWFGTGYALGIPVPVWLMVIVFAAAWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGMLAALA
GIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAV
LVDNKNK

Sequences:

>Translated_327_residues
MSTNTMSKPNETGSKKLFTKEWLIEQKSLIALIFLIVVVSFLNPNFFTVDNILNILRQTSVNAIIAVGMTLVILTAGIDL
SVGSVLALCGAFAASMIALEVPVLIAVPTALFAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGF
TDTADAFAWFGTGYALGIPVPVWLMVIVFAAAWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGMLAALA
GIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAV
LVDNKNK
>Mature_326_residues
STNTMSKPNETGSKKLFTKEWLIEQKSLIALIFLIVVVSFLNPNFFTVDNILNILRQTSVNAIIAVGMTLVILTAGIDLS
VGSVLALCGAFAASMIALEVPVLIAVPTALFAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFT
DTADAFAWFGTGYALGIPVPVWLMVIVFAAAWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGMLAALAG
IIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVL
VDNKNK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=327, Percent_Identity=72.17125382263, Blast_Score=450, Evalue=1e-128,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=37.037037037037, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1790524, Length=324, Percent_Identity=40.7407407407407, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI145693152, Length=329, Percent_Identity=37.0820668693009, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1789992, Length=340, Percent_Identity=37.6470588235294, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=39.7993311036789, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI145693214, Length=301, Percent_Identity=36.8770764119601, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=36.1702127659575, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=30.8771929824561, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1787794, Length=281, Percent_Identity=31.3167259786477, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34347; Mature: 34216

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNTMSKPNETGSKKLFTKEWLIEQKSLIALIFLIVVVSFLNPNFFTVDNILNILRQTS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
VNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAASMIALEVPVLIAVPTALFAGAALGAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADAFAWFGTGYALGIPV
HHHEEECCHHHHHHHHHHHHHHHCCCEEEEECCEECCCCCCCHHHHHHHHCCCEEECCCH
PVWLMVIVFAAAWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGMLAALA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
GIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDVSSYYQMIAKAVVILLAVLVDNKNK
HHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STNTMSKPNETGSKKLFTKEWLIEQKSLIALIFLIVVVSFLNPNFFTVDNILNILRQTS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
VNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAASMIALEVPVLIAVPTALFAGAALGAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADAFAWFGTGYALGIPV
HHHEEECCHHHHHHHHHHHHHHHCCCEEEEECCEECCCCCCCHHHHHHHHCCCEEECCCH
PVWLMVIVFAAAWYLLNHTRFGRYVYALGGNESATRLSGINVDRVKIGVYAICGMLAALA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
GIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNL
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDVSSYYQMIAKAVVILLAVLVDNKNK
HHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]