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The map label for this gene is rbsB [H]

Identifier: 156977357

GI number: 156977357

Start: 1321358

End: 1322236

Strand: Reverse

Name: rbsB [H]

Synonym: VIBHAR_06143

Alternate gene names: 156977357

Gene position: 1322236-1321358 (Counterclockwise)

Preceding gene: 156977358

Following gene: 156977356

Centisome position: 59.99

GC content: 48.81

Gene sequence:

>879_bases
ATGAAAAAACTCGCAACTCTTATCTCTGCTGCTCTTCTTTCTTCAACCGTATCGGTAGCGGCGCAAGCTCAAGATACCAT
GGCGATTGTAGTTTCTACGCTAAATAACCCGTTCTTCGTAACGATGAAAGACGGCGCAGAAGCGAAAGCGAAAGAACTGG
GATACGACTTGATTGTACTGGACTCGCAAAATGACCCGAGTAAAGAACTATCAAACATCGAAGACCTGACGATTCGTGGC
GTAAAGGCGATTCTGATTAACCCAACAGATTCAGACGCTGTGTCAAACGCGATTCGTATGGCGAACCGTTCTAAGATCCC
TGTGTTGACACTTGACCGTTGCGCGAGCCGTGGCGAAGTAGTGAGCCACATCGCTTCTGACAACGTAGTTGGTGGTGAAA
TGGCGGGTCACTACATCATCGAAAAAGTAGGCGAGAAAGCGAAAGTTATCCAACTAGAAGGCATTGCCGGTACGTCTGCG
GCGCGTGAGCGTGGTGAAGGCTTCATGACAGCAGTGAAAGGCAGCAACATGGAGCTACTAGCAAGCCAACCTGCTGATTT
TGACCGTACTAAAGGTCTGAACGTAATGGAAAACTTGCTTGCAGCGAACCCAGATGTTCAAGCGGTATTTGCTCAGAACG
ATGAGATGGCACTGGGTGCGCTTCGCGCAGTACAAGCATCAGGTAAAGACGTACTTATCGTTGGCTTTGACGGTACTGAC
GACGGCATTGCTGCTGTTAACCGTGGCAAGCTCGCAGCAACCATCGCACAGCAACCAGATCTTATTGGTGCGTTGGGTGT
AGAAACTGCAGCAAAAGTATTGAAAGGCGAGAAGGTTGAGGAGTACATTCCTGTTCCGCTTAAAGTCGTGACTAAGTAA

Upstream 100 bases:

>100_bases
AACAAGTAATCCATAACAACTAATACATTAAAGCTAAATCCTGAATACAAGCCGAGCCAGAGGACGTGTGCTGGCTCACC
CTACACAAAGGACTAGAACG

Downstream 100 bases:

>100_bases
GTTTAACGCCTGACTCATTGATTCTTTTTGCTGAAGTAACGGAATGACCCAATGAATGTGTTGGGTCATTCCAAACAACG
AAAGAGGTACGTTAGAAAAC

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKKLATLISAALLSSTVSVAAQAQDTMAIVVSTLNNPFFVTMKDGAEAKAKELGYDLIVLDSQNDPSKELSNIEDLTIRG
VKAILINPTDSDAVSNAIRMANRSKIPVLTLDRCASRGEVVSHIASDNVVGGEMAGHYIIEKVGEKAKVIQLEGIAGTSA
ARERGEGFMTAVKGSNMELLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTD
DGIAAVNRGKLAATIAQQPDLIGALGVETAAKVLKGEKVEEYIPVPLKVVTK

Sequences:

>Translated_292_residues
MKKLATLISAALLSSTVSVAAQAQDTMAIVVSTLNNPFFVTMKDGAEAKAKELGYDLIVLDSQNDPSKELSNIEDLTIRG
VKAILINPTDSDAVSNAIRMANRSKIPVLTLDRCASRGEVVSHIASDNVVGGEMAGHYIIEKVGEKAKVIQLEGIAGTSA
ARERGEGFMTAVKGSNMELLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTD
DGIAAVNRGKLAATIAQQPDLIGALGVETAAKVLKGEKVEEYIPVPLKVVTK
>Mature_292_residues
MKKLATLISAALLSSTVSVAAQAQDTMAIVVSTLNNPFFVTMKDGAEAKAKELGYDLIVLDSQNDPSKELSNIEDLTIRG
VKAILINPTDSDAVSNAIRMANRSKIPVLTLDRCASRGEVVSHIASDNVVGGEMAGHYIIEKVGEKAKVIQLEGIAGTSA
ARERGEGFMTAVKGSNMELLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTD
DGIAAVNRGKLAATIAQQPDLIGALGVETAAKVLKGEKVEEYIPVPLKVVTK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=293, Percent_Identity=72.0136518771331, Blast_Score=425, Evalue=1e-120,
Organism=Escherichia coli, GI1790526, Length=311, Percent_Identity=35.3697749196142, Blast_Score=154, Evalue=5e-39,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=29.5652173913043, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1790194, Length=250, Percent_Identity=28, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788473, Length=279, Percent_Identity=27.9569892473118, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1789990, Length=270, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788898, Length=314, Percent_Identity=25.4777070063694, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787948, Length=245, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30658; Mature: 30658

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLATLISAALLSSTVSVAAQAQDTMAIVVSTLNNPFFVTMKDGAEAKAKELGYDLIVL
CHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEECCCCCHHHHHCCCEEEEE
DSQNDPSKELSNIEDLTIRGVKAILINPTDSDAVSNAIRMANRSKIPVLTLDRCASRGEV
ECCCCCHHHHCCCHHEEEECEEEEEECCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCCHH
VSHIASDNVVGGEMAGHYIIEKVGEKAKVIQLEGIAGTSAARERGEGFMTAVKGSNMELL
HHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCEEEEECCCCEEEE
ASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTD
ECCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
DGIAAVNRGKLAATIAQQPDLIGALGVETAAKVLKGEKVEEYIPVPLKVVTK
CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCEEEECC
>Mature Secondary Structure
MKKLATLISAALLSSTVSVAAQAQDTMAIVVSTLNNPFFVTMKDGAEAKAKELGYDLIVL
CHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEECCCCCHHHHHCCCEEEEE
DSQNDPSKELSNIEDLTIRGVKAILINPTDSDAVSNAIRMANRSKIPVLTLDRCASRGEV
ECCCCCHHHHCCCHHEEEECEEEEEECCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCCHH
VSHIASDNVVGGEMAGHYIIEKVGEKAKVIQLEGIAGTSAARERGEGFMTAVKGSNMELL
HHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCEEEEECCCCEEEE
ASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTD
ECCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
DGIAAVNRGKLAATIAQQPDLIGALGVETAAKVLKGEKVEEYIPVPLKVVTK
CCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]