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The map label for this gene is yccS [H]

Identifier: 156977337

GI number: 156977337

Start: 1288675

End: 1290828

Strand: Direct

Name: yccS [H]

Synonym: VIBHAR_06123

Alternate gene names: 156977337

Gene position: 1288675-1290828 (Clockwise)

Preceding gene: 156977335

Following gene: 156977338

Centisome position: 58.47

GC content: 46.75

Gene sequence:

>2154_bases
GTGCAAGCTGCTTTAAAATTTCGCCTCTATTGGGCAAACAAAACCATCAACTACAGTATCCTGATCCTTATTACCTTATT
AGGCGTCGTGATTCCTGCATGGTACTTTCAACAAAACTCATTGATCACGCCCCTCATCTTAGGTGTTATCGCGGCTGCAT
TGGCAGAGAGTGACGACAGCTTCACGGGAAGGGTCAAAGCACTGATTCTTACCTTTATCTGTTTCGCCGTCGCCGCTTTC
TCGATTGAGATTCTCTTTGATACGCCATGGGCTTTTGCGGTCGGGCTGTTTGTCTCAACCTTTGGCTTTATCATGCTGGG
TGCTATCGGCCCGAAATACGCCAGCATCGCGTTTGGATCGTTACTGATAGCCATCTACACCATGCTCGGCGCCCATGAAA
GTACCAACATTTGGTTTCAACCGCTGCTGCTTCTCACTGGTGCGGCTTGGTACTATTTCATGTCGATGATTTGGCAGATG
TTCTGGCCACTTCAACCTGTTCAGCAAAGTCTTGCAACTGTATTCCTCCAAATCGCCAATTATCTCGACGCGAAGGCGAA
GCTATTTCACCCAGTAACAAACTTAACGCCTCAGCCAATGCGTATCGAGGCAGCAAAGTTAAATGCGGCTACAGTGAACG
CTCTCGACGCTTGTAAAGCAACGCTATTAAGCCGCTCTAAGCGTGGGCACATTGATGGCCCAAGTGACCGATTTTTGAAT
ATCTACTTTATCGCACAGGATATCCACGAACGAGTTAGCTCAAGCCACTATCGTTACCAAGATTTGGCCACCGAATTCGA
GCGCTCAGACGTTTTATTCCGCTTTAAGTACTTACTTGAGTCCCAAGCTCAGGCTTGTCGCGATATTGCTCATGCGATTC
GATTAGGGAACGAATACACCCACACTGACCAGTCGATTTTGGCGTTAGCCGAATTACAGAACTCATTGGGTTATCTGGAA
GATCAAGAACAAGCACACTGGAAGCGTCTTCTGAGTCAGTTGACCTACTTGTTCAATAACCTTGCGACCGTAGAGAAACA
GCTTAGTAACATTAACAACCCAGATGCAGAGCGCTTGGAAGAAGATGTGCTAGATGATACGAACCCACATACGCTTAAAG
CGATGTGGCAACGTATCTCAGCGAACTTACACAAAGATTCCATGCTGTTCCGTCATGCATTACGTATGTCGATTGCACTA
ACGGCGGGCTACGGAATTATTCAAGCGTTTGATATTGATCGTGGCTACTGGATTCTGCTTACCACGTTATTTGTTTGCCA
ACCAAACTACAGTGCGACAAGACAAAAACTCACAGCGCGTGTAATAGGTACATTGGCGGGCTTACTGATTGGTGTACCAC
TTCTTACTTTCTTCCCTTCACAAGAAAGCCAACTGGTGTTTGTTGTCGTTTCTGGGGTGATGTTCTTTGCTTTCCGAATC
AACAACTACGGCTATGCGACGGGTTTTATCACTTTATTAGTGCTTTTCCTGTTCAACCAACTGGGCGAAGGTTATGCGGT
AGTACTTCCTCGCCTTGCAGATACACTGATTGGCTGTGTGTTGGCCGTTGGCGCGGTCATGGCGATTCTGCCCGATTGGC
AGTCAAAACGTTTACACAAGGTCATGTCAGATGCGATAGATGCAAACAAACAGTATCTGGGTCAAATCATTGGCCAGTAT
CGAATTGGCAAGAAAGATAACTTAAGTTATCGAATCGCCCGTCGGCAAGCACACAATAACGATGCAAACCTTTCTTCCGC
GATCAGTACGATGCTGGCAGAGCCTGGTAAGTATCGAACCGCCGTGGATGAGAGTTTTCGCTTCTTAACGCTTAACCATG
CCATGCTCAGCTACATCTCTGCTCTTGGCGCACACCGCACAAGAATAGAAGATGAGGCCATTCATCAATTGGTGCTTGAT
GCACACCGTTGTATCCACCAGCATTTAGATGTGCTTCACCAACAATTGCATCAACATTGTGAAGAATGTGATTTATCCTC
AATTAACGATACGAACTTGGAGCAGCGCTTGAATGAATGGCGCGACGAGGACGATCATTCAGCTCGAATGGTACTTCAGC
AATTGCATCTCATTTATCGCATGCTACCGGAGTTACATTCGCTCGCCTCTAAGTTTGCCGTCCGCGTGAACTAA

Upstream 100 bases:

>100_bases
TTCCTGAGCAAATGACGATTTTTATTAAATTAGGTCATAAACGCGCTATAGTGAGTTTGTTAAAATTCTCTCGTTTTCCA
CCGGCAACGAAAGGCGCATT

Downstream 100 bases:

>100_bases
CTCAGCCTGTGGTCTCACTGAAACTATTGAACCGGCTTCGCATATTAAAGGGGTAGACTATGATTCTACCCCTTTATGAT
TACGAGACTTATTCATAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 717; Mature: 717

Protein sequence:

>717_residues
MQAALKFRLYWANKTINYSILILITLLGVVIPAWYFQQNSLITPLILGVIAAALAESDDSFTGRVKALILTFICFAVAAF
SIEILFDTPWAFAVGLFVSTFGFIMLGAIGPKYASIAFGSLLIAIYTMLGAHESTNIWFQPLLLLTGAAWYYFMSMIWQM
FWPLQPVQQSLATVFLQIANYLDAKAKLFHPVTNLTPQPMRIEAAKLNAATVNALDACKATLLSRSKRGHIDGPSDRFLN
IYFIAQDIHERVSSSHYRYQDLATEFERSDVLFRFKYLLESQAQACRDIAHAIRLGNEYTHTDQSILALAELQNSLGYLE
DQEQAHWKRLLSQLTYLFNNLATVEKQLSNINNPDAERLEEDVLDDTNPHTLKAMWQRISANLHKDSMLFRHALRMSIAL
TAGYGIIQAFDIDRGYWILLTTLFVCQPNYSATRQKLTARVIGTLAGLLIGVPLLTFFPSQESQLVFVVVSGVMFFAFRI
NNYGYATGFITLLVLFLFNQLGEGYAVVLPRLADTLIGCVLAVGAVMAILPDWQSKRLHKVMSDAIDANKQYLGQIIGQY
RIGKKDNLSYRIARRQAHNNDANLSSAISTMLAEPGKYRTAVDESFRFLTLNHAMLSYISALGAHRTRIEDEAIHQLVLD
AHRCIHQHLDVLHQQLHQHCEECDLSSINDTNLEQRLNEWRDEDDHSARMVLQQLHLIYRMLPELHSLASKFAVRVN

Sequences:

>Translated_717_residues
MQAALKFRLYWANKTINYSILILITLLGVVIPAWYFQQNSLITPLILGVIAAALAESDDSFTGRVKALILTFICFAVAAF
SIEILFDTPWAFAVGLFVSTFGFIMLGAIGPKYASIAFGSLLIAIYTMLGAHESTNIWFQPLLLLTGAAWYYFMSMIWQM
FWPLQPVQQSLATVFLQIANYLDAKAKLFHPVTNLTPQPMRIEAAKLNAATVNALDACKATLLSRSKRGHIDGPSDRFLN
IYFIAQDIHERVSSSHYRYQDLATEFERSDVLFRFKYLLESQAQACRDIAHAIRLGNEYTHTDQSILALAELQNSLGYLE
DQEQAHWKRLLSQLTYLFNNLATVEKQLSNINNPDAERLEEDVLDDTNPHTLKAMWQRISANLHKDSMLFRHALRMSIAL
TAGYGIIQAFDIDRGYWILLTTLFVCQPNYSATRQKLTARVIGTLAGLLIGVPLLTFFPSQESQLVFVVVSGVMFFAFRI
NNYGYATGFITLLVLFLFNQLGEGYAVVLPRLADTLIGCVLAVGAVMAILPDWQSKRLHKVMSDAIDANKQYLGQIIGQY
RIGKKDNLSYRIARRQAHNNDANLSSAISTMLAEPGKYRTAVDESFRFLTLNHAMLSYISALGAHRTRIEDEAIHQLVLD
AHRCIHQHLDVLHQQLHQHCEECDLSSINDTNLEQRLNEWRDEDDHSARMVLQQLHLIYRMLPELHSLASKFAVRVN
>Mature_717_residues
MQAALKFRLYWANKTINYSILILITLLGVVIPAWYFQQNSLITPLILGVIAAALAESDDSFTGRVKALILTFICFAVAAF
SIEILFDTPWAFAVGLFVSTFGFIMLGAIGPKYASIAFGSLLIAIYTMLGAHESTNIWFQPLLLLTGAAWYYFMSMIWQM
FWPLQPVQQSLATVFLQIANYLDAKAKLFHPVTNLTPQPMRIEAAKLNAATVNALDACKATLLSRSKRGHIDGPSDRFLN
IYFIAQDIHERVSSSHYRYQDLATEFERSDVLFRFKYLLESQAQACRDIAHAIRLGNEYTHTDQSILALAELQNSLGYLE
DQEQAHWKRLLSQLTYLFNNLATVEKQLSNINNPDAERLEEDVLDDTNPHTLKAMWQRISANLHKDSMLFRHALRMSIAL
TAGYGIIQAFDIDRGYWILLTTLFVCQPNYSATRQKLTARVIGTLAGLLIGVPLLTFFPSQESQLVFVVVSGVMFFAFRI
NNYGYATGFITLLVLFLFNQLGEGYAVVLPRLADTLIGCVLAVGAVMAILPDWQSKRLHKVMSDAIDANKQYLGQIIGQY
RIGKKDNLSYRIARRQAHNNDANLSSAISTMLAEPGKYRTAVDESFRFLTLNHAMLSYISALGAHRTRIEDEAIHQLVLD
AHRCIHQHLDVLHQQLHQHCEECDLSSINDTNLEQRLNEWRDEDDHSARMVLQQLHLIYRMLPELHSLASKFAVRVN

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=714, Percent_Identity=43.4173669467787, Blast_Score=550, Evalue=1e-158,
Organism=Escherichia coli, GI87082248, Length=547, Percent_Identity=27.4223034734918, Blast_Score=147, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81195; Mature: 81195

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAALKFRLYWANKTINYSILILITLLGVVIPAWYFQQNSLITPLILGVIAAALAESDDS
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
FTGRVKALILTFICFAVAAFSIEILFDTPWAFAVGLFVSTFGFIMLGAIGPKYASIAFGS
HHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLIAIYTMLGAHESTNIWFQPLLLLTGAAWYYFMSMIWQMFWPLQPVQQSLATVFLQIAN
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YLDAKAKLFHPVTNLTPQPMRIEAAKLNAATVNALDACKATLLSRSKRGHIDGPSDRFLN
HHHHHHHHHHHHHCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
IYFIAQDIHERVSSSHYRYQDLATEFERSDVLFRFKYLLESQAQACRDIAHAIRLGNEYT
EEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HTDQSILALAELQNSLGYLEDQEQAHWKRLLSQLTYLFNNLATVEKQLSNINNPDAERLE
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
EDVLDDTNPHTLKAMWQRISANLHKDSMLFRHALRMSIALTAGYGIIQAFDIDRGYWILL
HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
TTLFVCQPNYSATRQKLTARVIGTLAGLLIGVPLLTFFPSQESQLVFVVVSGVMFFAFRI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
NNYGYATGFITLLVLFLFNQLGEGYAVVLPRLADTLIGCVLAVGAVMAILPDWQSKRLHK
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VMSDAIDANKQYLGQIIGQYRIGKKDNLSYRIARRQAHNNDANLSSAISTMLAEPGKYRT
HHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
AVDESFRFLTLNHAMLSYISALGAHRTRIEDEAIHQLVLDAHRCIHQHLDVLHQQLHQHC
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EECDLSSINDTNLEQRLNEWRDEDDHSARMVLQQLHLIYRMLPELHSLASKFAVRVN
HHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQAALKFRLYWANKTINYSILILITLLGVVIPAWYFQQNSLITPLILGVIAAALAESDDS
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
FTGRVKALILTFICFAVAAFSIEILFDTPWAFAVGLFVSTFGFIMLGAIGPKYASIAFGS
HHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLIAIYTMLGAHESTNIWFQPLLLLTGAAWYYFMSMIWQMFWPLQPVQQSLATVFLQIAN
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YLDAKAKLFHPVTNLTPQPMRIEAAKLNAATVNALDACKATLLSRSKRGHIDGPSDRFLN
HHHHHHHHHHHHHCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
IYFIAQDIHERVSSSHYRYQDLATEFERSDVLFRFKYLLESQAQACRDIAHAIRLGNEYT
EEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
HTDQSILALAELQNSLGYLEDQEQAHWKRLLSQLTYLFNNLATVEKQLSNINNPDAERLE
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
EDVLDDTNPHTLKAMWQRISANLHKDSMLFRHALRMSIALTAGYGIIQAFDIDRGYWILL
HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
TTLFVCQPNYSATRQKLTARVIGTLAGLLIGVPLLTFFPSQESQLVFVVVSGVMFFAFRI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
NNYGYATGFITLLVLFLFNQLGEGYAVVLPRLADTLIGCVLAVGAVMAILPDWQSKRLHK
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VMSDAIDANKQYLGQIIGQYRIGKKDNLSYRIARRQAHNNDANLSSAISTMLAEPGKYRT
HHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHH
AVDESFRFLTLNHAMLSYISALGAHRTRIEDEAIHQLVLDAHRCIHQHLDVLHQQLHQHC
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EECDLSSINDTNLEQRLNEWRDEDDHSARMVLQQLHLIYRMLPELHSLASKFAVRVN
HHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]