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The map label for this gene is dcd [H]

Identifier: 156977283

GI number: 156977283

Start: 1239811

End: 1240296

Strand: Reverse

Name: dcd [H]

Synonym: VIBHAR_06069

Alternate gene names: 156977283

Gene position: 1240296-1239811 (Counterclockwise)

Preceding gene: 156977284

Following gene: 156977281

Centisome position: 56.27

GC content: 39.51

Gene sequence:

>486_bases
ATGATATTGACAGGCTCAGAGATACGTAAACAACGAGCGTTGAATACTATTCAAATTTCTCCTTTTTGTGAGAAACAAGT
GAATCCAAATAGCTACAATTATCGCCTTGGGCCCACACTTAAAGTCTTTGATGAGAAAGCTTCTGAATTTTTTATTATTG
AGATTCCCGAAGAAGGATATATTCTCGAGCCTCACAAAATGTATCTTGGACATACCATGGAGGTGTTAGGTAGTGATATA
TATGCCATGCGTCTAATTGGAAGAAGCTCTCTTGGTCGATATGGGTTATTTCTACAAGTTAGTGCTGATTTGGGGCACAC
CACTTCTTGCCACCAATGGACGTTGGAATTGGTAGCGACTCAACCAATTCGTTTGTATTCCAATATGATAATAGGGCAAA
TTTCATTTTGGAACAACTTTGGCGACATCAGTTGTTTCGGAAAGACGTTCGCTAATTTTAATACCCCTACGGAGGGATAC
CGATGA

Upstream 100 bases:

>100_bases
GAATATCAAAGTTATTCAGTTATGGTTCTTGGTTATCATCAAAATGAGTACCCTGCTAGGTATGTAGAGCTCTTTTAATT
GTTATAGGGATGTTTCTAGT

Downstream 100 bases:

>100_bases
TTCTCACTGGGAAAAAAATAAGCCAAGAAGCGGAAAATGGAAATATTATTTTGGATCCATACGCAGATCTACGTGTAACT
TCTAATTCTTATGATCTAGC

Product: deoxycytidine deaminase

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MILTGSEIRKQRALNTIQISPFCEKQVNPNSYNYRLGPTLKVFDEKASEFFIIEIPEEGYILEPHKMYLGHTMEVLGSDI
YAMRLIGRSSLGRYGLFLQVSADLGHTTSCHQWTLELVATQPIRLYSNMIIGQISFWNNFGDISCFGKTFANFNTPTEGY
R

Sequences:

>Translated_161_residues
MILTGSEIRKQRALNTIQISPFCEKQVNPNSYNYRLGPTLKVFDEKASEFFIIEIPEEGYILEPHKMYLGHTMEVLGSDI
YAMRLIGRSSLGRYGLFLQVSADLGHTTSCHQWTLELVATQPIRLYSNMIIGQISFWNNFGDISCFGKTFANFNTPTEGY
R
>Mature_161_residues
MILTGSEIRKQRALNTIQISPFCEKQVNPNSYNYRLGPTLKVFDEKASEFFIIEIPEEGYILEPHKMYLGHTMEVLGSDI
YAMRLIGRSSLGRYGLFLQVSADLGHTTSCHQWTLELVATQPIRLYSNMIIGQISFWNNFGDISCFGKTFANFNTPTEGY
R

Specific function: Unknown

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962 [H]

Pfam domain/function: NA

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 18400; Mature: 18400

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILTGSEIRKQRALNTIQISPFCEKQVNPNSYNYRLGPTLKVFDEKASEFFIIEIPEEGY
CEECCHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCEEEEEECCCCEEEEEEECCCCE
ILEPHKMYLGHTMEVLGSDIYAMRLIGRSSLGRYGLFLQVSADLGHTTSCHQWTLELVAT
EECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCHHHEEEEEEEC
QPIRLYSNMIIGQISFWNNFGDISCFGKTFANFNTPTEGYR
CCHHHHHHEEEEEEEECCCCCCEEEHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MILTGSEIRKQRALNTIQISPFCEKQVNPNSYNYRLGPTLKVFDEKASEFFIIEIPEEGY
CEECCHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCEEEEEECCCCEEEEEEECCCCE
ILEPHKMYLGHTMEVLGSDIYAMRLIGRSSLGRYGLFLQVSADLGHTTSCHQWTLELVAT
EECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCHHHEEEEEEEC
QPIRLYSNMIIGQISFWNNFGDISCFGKTFANFNTPTEGYR
CCHHHHHHEEEEEEEECCCCCCEEEHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]