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The map label for this gene is dcd [H]

Identifier: 156977281

GI number: 156977281

Start: 1239296

End: 1239814

Strand: Reverse

Name: dcd [H]

Synonym: VIBHAR_06067

Alternate gene names: 156977281

Gene position: 1239814-1239296 (Counterclockwise)

Preceding gene: 156977283

Following gene: 156977280

Centisome position: 56.25

GC content: 38.54

Gene sequence:

>519_bases
ATGATTCTCACTGGGAAAAAAATAAGCCAAGAAGCGGAAAATGGAAATATTATTTTGGATCCATACGCAGATCTACGTGT
AACTTCTAATTCTTATGATCTAGCTCTCGGCAAAAAGTATATTGTGTATGACGACGAGATAATAGACCCATTTAAGAAAG
CGAACTTTCAAATGCATACAATGCCAGAGGAAGGGATTTATCTTAATAAAGGTGATTTTATACTATGCGAATCGGCAGAG
CGCGTTGGAAGTGAACATTATGTTCCTATTATCCACGCAAAGTCTGGTATTGCACGTGCAGGTCTATTTGTACATGTAAC
CGCAGATCTAATAGATATTGGTTCAATTGGTAAAATTACCTTCCAACTTTATGCGACTTTACCTGTCAAGATAGTTCCAG
GTATGTTGATTGGGCAAGTATCGTTCTGGGTCCCGGATGGGGATGTAGAATTATACAACGGTAAGTATCAGGGCTCTGAA
GGGCCTATGGTAAGTAAAACTTATCTTGATTACGTTTGA

Upstream 100 bases:

>100_bases
ATATGATAATAGGGCAAATTTCATTTTGGAACAACTTTGGCGACATCAGTTGTTTCGGAAAGACGTTCGCTAATTTTAAT
ACCCCTACGGAGGGATACCG

Downstream 100 bases:

>100_bases
GGTGGCGTTCTATGCACATAGCAAATGGTACGCTTCCTTTCGAAGAAGGTTGGGAAGTGTTAAGCCTCAAGCTGTCCGAT
TTTTATGGTTTGAGATTATC

Product: hypothetical protein

Products: NA

Alternate protein names: dCTP deaminase [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MILTGKKISQEAENGNIILDPYADLRVTSNSYDLALGKKYIVYDDEIIDPFKKANFQMHTMPEEGIYLNKGDFILCESAE
RVGSEHYVPIIHAKSGIARAGLFVHVTADLIDIGSIGKITFQLYATLPVKIVPGMLIGQVSFWVPDGDVELYNGKYQGSE
GPMVSKTYLDYV

Sequences:

>Translated_172_residues
MILTGKKISQEAENGNIILDPYADLRVTSNSYDLALGKKYIVYDDEIIDPFKKANFQMHTMPEEGIYLNKGDFILCESAE
RVGSEHYVPIIHAKSGIARAGLFVHVTADLIDIGSIGKITFQLYATLPVKIVPGMLIGQVSFWVPDGDVELYNGKYQGSE
GPMVSKTYLDYV
>Mature_172_residues
MILTGKKISQEAENGNIILDPYADLRVTSNSYDLALGKKYIVYDDEIIDPFKKANFQMHTMPEEGIYLNKGDFILCESAE
RVGSEHYVPIIHAKSGIARAGLFVHVTADLIDIGSIGKITFQLYATLPVKIVPGMLIGQVSFWVPDGDVELYNGKYQGSE
GPMVSKTYLDYV

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011962 [H]

Pfam domain/function: NA

EC number: =3.5.4.13 [H]

Molecular weight: Translated: 19083; Mature: 19083

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILTGKKISQEAENGNIILDPYADLRVTSNSYDLALGKKYIVYDDEIIDPFKKANFQMHT
CEECCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCEEEEECCHHHCHHHHCCEEEEE
MPEEGIYLNKGDFILCESAERVGSEHYVPIIHAKSGIARAGLFVHVTADLIDIGSIGKIT
CCCCCEEECCCCEEEECCHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEE
FQLYATLPVKIVPGMLIGQVSFWVPDGDVELYNGKYQGSEGPMVSKTYLDYV
EEEEEECCEEECCCEEEEEEEEEECCCCEEEECCEEECCCCCEEEHEEECCC
>Mature Secondary Structure
MILTGKKISQEAENGNIILDPYADLRVTSNSYDLALGKKYIVYDDEIIDPFKKANFQMHT
CEECCCCCCCCCCCCCEEECCCCCEEEECCCEEEEECCEEEEECCHHHCHHHHCCEEEEE
MPEEGIYLNKGDFILCESAERVGSEHYVPIIHAKSGIARAGLFVHVTADLIDIGSIGKIT
CCCCCEEECCCCEEEECCHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCEEE
FQLYATLPVKIVPGMLIGQVSFWVPDGDVELYNGKYQGSEGPMVSKTYLDYV
EEEEEECCEEECCCEEEEEEEEEECCCCEEEECCEEECCCCCEEEHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9922257 [H]