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The map label for this gene is 156977263

Identifier: 156977263

GI number: 156977263

Start: 1225646

End: 1226299

Strand: Reverse

Name: 156977263

Synonym: VIBHAR_06049

Alternate gene names: NA

Gene position: 1226299-1225646 (Counterclockwise)

Preceding gene: 156977264

Following gene: 156977262

Centisome position: 55.64

GC content: 47.55

Gene sequence:

>654_bases
TTGCTATCCAATATCGTATTAGATGAACTGGATAAAGAGCTAGAGCGTAGAGGGCATAAGTTCTGTCGATATGCAGACGA
CTGTCAAATCTATGTTGGTAGTGAGGAAGCCGCTTATCGAGTGAAAGAGTCGATAACGGAGTACTTGGAGCAAAAACTGA
AACTCACGGTAAACCGAGAGAAAAGTGCAGCAACAAGAGTGACAGAGCGAACTTACCTAAGCCACCGCTTCGGGATAGAT
GGGACAATCCATATATCGAAGCCAGCGCAAACTCAAATGAAGACGCGAGTGCGGCAGATAACGAAGCGAAACCGAGGTCG
AGAGTTAAAGGTGGTAATCGCCGAGTTAACTCAATACCTAAGAGGTTGGCAAGACTACTTCAAACTCGCCATACGGAAGA
GCAGCATGAAGCGCTTGGACGAATGGATACGGCGACGGCTAAGATGCTATCGACTTAAGCAACGCAAACACAGATACGGC
ATAGCGACATGGTTACAGCGACAAGGTGTAACAGAGCGTAATGCGTGGAAGTTAGCGATGTCAGATAAAGGTTGGTGGCG
GCTAGCATTAACGCCCCAGACAAATCACGCTATGCCAACAAATGGTTCGAGGAGTTGGGTCTGTACTCGTTGCGAGATGG
GTATGAGTCACTAA

Upstream 100 bases:

>100_bases
GACTCCCCAAATATTCAATATTACTTTTTAAAGGTGAGCCTGAATTCTATAGAAACAAGCTTAATATCGTCATGTCACAC
AGGGTGGTCCATTATCTCCG

Downstream 100 bases:

>100_bases
AAGTATATTCGGAACCGCCGTATGCGACCCACGCTTGTACGGTGGTGTGAGAGGACGGAGGCCGTGAGGCCTCCTCCTAC
TCGATTAAGGTTATGAAAAT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Reverse Transcriptase/Maturase Family Protein; Reverse Transcriptase/Maturase; Group II Intron-Encoding Maturase; GBSi1 Group II Intron Maturase; Reverse Transcriptase; Recombinase; Retron-Type Reverse Transcriptase; Maturase; Reverse Transcriptase/Maturase Group FT II Introns; Reverse Transcriptase Family Protein; Transposase; Regulatory Protein GntR; Ecombinase For Bh.Int; Group II Intron-Encoded Maturase; Integron/Retron-Type RNA-Directed DNA Polymerase; Group II Intron Maturase; Group II Intron-Encoded Protein; Reverse Transcriptasematurase Protein; Group II Intron Reverse Transcriptase/Maturase; Na-Directed DNA Polymerase

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGID
GTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYG
IATWLQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTNGSRSWVCTRCEMGMSH

Sequences:

>Translated_217_residues
MLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGID
GTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYG
IATWLQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTNGSRSWVCTRCEMGMSH
>Mature_217_residues
MLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGID
GTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYG
IATWLQRQGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTNGSRSWVCTRCEMGMSH

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25884; Mature: 25884

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNRE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
KSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYL
HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
SDKGWWRLALTPQTNHAMPTNGSRSWVCTRCEMGMSH
CCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITEYLEQKLKLTVNRE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
KSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRELKVVIAELTQYL
HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
SDKGWWRLALTPQTNHAMPTNGSRSWVCTRCEMGMSH
CCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA