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The map label for this gene is rcnR [H]

Identifier: 156977239

GI number: 156977239

Start: 1210253

End: 1210525

Strand: Direct

Name: rcnR [H]

Synonym: VIBHAR_06025

Alternate gene names: 156977239

Gene position: 1210253-1210525 (Clockwise)

Preceding gene: 156977237

Following gene: 156977244

Centisome position: 54.91

GC content: 42.86

Gene sequence:

>273_bases
ATGTCACACACAGCCAAAGATAAGAAAAAGCTCACGGCTCGAGTCAGTAAAATACAAGGCCAAGTAAATGGTCTAAAAAA
AATGCTGGATGAAGAGCAAGAATGTCAGGACGTATTACAACAGATTGCCGCAATCCGAGGTGCTGTAAATGGCTTAATGA
AAGAGGTCATTAAAGGCCACTTACATGAGCACCTCGTTCTAGAAGAGGATAAAGATCAGCGCGAGGCTGATATGAACGTT
GTGATGAAGGTAATCGACTCCTACGTCAAGTAG

Upstream 100 bases:

>100_bases
TGGTTTTAGAAAACAACTTAAAACACTACCCCCCAGTATAAGTTCGGTGCTACATTACGTCTCATACCTATCTTCCGCCA
ATTACATTGAGAACTTTGCC

Downstream 100 bases:

>100_bases
TTGCCTGGTCTTATTCGGCTTTCATTTGAGATAGACGCTTTTGTAAATCCTTCTTGAGCGAGTTGATGGCATAAGGCTTC
ATCGACTTCCACGCCTTACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MSHTAKDKKKLTARVSKIQGQVNGLKKMLDEEQECQDVLQQIAAIRGAVNGLMKEVIKGHLHEHLVLEEDKDQREADMNV
VMKVIDSYVK

Sequences:

>Translated_90_residues
MSHTAKDKKKLTARVSKIQGQVNGLKKMLDEEQECQDVLQQIAAIRGAVNGLMKEVIKGHLHEHLVLEEDKDQREADMNV
VMKVIDSYVK
>Mature_89_residues
SHTAKDKKKLTARVSKIQGQVNGLKKMLDEEQECQDVLQQIAAIRGAVNGLMKEVIKGHLHEHLVLEEDKDQREADMNVV
MKVIDSYVK

Specific function: Repressor of rcnA expression. Acts by binding specifically to the rcnA promoter in the absence of nickel and cobalt. In the presence of one of these metals, it has a weaker affinity for rcnA promoter [H]

COG id: COG1937

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the frmR/rcnR family [H]

Homologues:

Organism=Escherichia coli, GI1788422, Length=90, Percent_Identity=71.1111111111111, Blast_Score=128, Evalue=8e-32,
Organism=Escherichia coli, GI87081725, Length=92, Percent_Identity=40.2173913043478, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003735 [H]

Pfam domain/function: PF02583 DUF156 [H]

EC number: NA

Molecular weight: Translated: 10211; Mature: 10080

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHTAKDKKKLTARVSKIQGQVNGLKKMLDEEQECQDVLQQIAAIRGAVNGLMKEVIKGH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHEHLVLEEDKDQREADMNVVMKVIDSYVK
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SHTAKDKKKLTARVSKIQGQVNGLKKMLDEEQECQDVLQQIAAIRGAVNGLMKEVIKGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LHEHLVLEEDKDQREADMNVVMKVIDSYVK
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA