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The map label for this gene is ycjC [C]

Identifier: 156977184

GI number: 156977184

Start: 1158952

End: 1159575

Strand: Reverse

Name: ycjC [C]

Synonym: VIBHAR_05970

Alternate gene names: 156977184

Gene position: 1159575-1158952 (Counterclockwise)

Preceding gene: 156977188

Following gene: 156977183

Centisome position: 52.61

GC content: 46.15

Gene sequence:

>624_bases
ATGGCAGAAAGTATTTACGATGAATACCCGTCAATGACGTTGGCAAAAGAGCAGCAAGACCAAAATATTGAACCGCTTAA
GCTCGGTCAACGCATCAAAGATATCCGCTCCAAACTCGGCATTACGTTAGAAGAGGCAAGCCAACGTACTGGCCTGGCGC
GTTCTACGCTAAGTAAGATAGAGAACGAACAGATTTCTCCGACGTTCCAAGCCATGCAAAAATTAGCGCACGGCTTGCAA
ATCGATATGCCGCAACTGTTTGAACCGCCAAGAAAAAAGGTGGCGACAGGGCGTAGAGATGTGACCAAGAAGAAAGAGGG
TAAACCACACCCAACCCAAACCTACGAGCATGAGCTTCTGGCGACTCAACTTTCCAATAAGAAAATGATGCCTTTTAAGA
GCCAAATCCGTGCCCGCAGTTTTGATGAATACAAAGACTGGGTTCGTCACGATGGCGAAGAGTTTTTGCTTATCTTATCC
GGAGAAGTGATGTTTTATTCTGAGTTCTATGAGCCTGTTGTATTAAGCGAAGGCGACAGTGTGTATTACGATGCGAACAT
GGGTCATATGTTGACCAGTGTGAGTGAGGAAGACGCGCACATTTTGTGGGTCACAGCCAAATAG

Upstream 100 bases:

>100_bases
AACAAGAGCACGCTTTAATTAACTCGGTGGACTTTTATCCACTGTAGGCTTCATGCACAATGCTAATAGAAAGGAATAAG
GGAGCTTTAAAGAGGGATTT

Downstream 100 bases:

>100_bases
TGATAAATAGTTGTAAATTTCCTATAGTGAAGGCAAACGATTGCCATTGGTTTTAAATGCGTTATGATGGCGCTCTGTTG
ATGATATCTCACTCAACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Protein; Cupin 2 Conserved Barrel Domain Protein; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; XRE Family-Like Protein; Transcriptional Regulator MerR Family; Epoxidase; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Xre Family; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; HTH_3family Transcriptional Regulator

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MAESIYDEYPSMTLAKEQQDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQ
IDMPQLFEPPRKKVATGRRDVTKKKEGKPHPTQTYEHELLATQLSNKKMMPFKSQIRARSFDEYKDWVRHDGEEFLLILS
GEVMFYSEFYEPVVLSEGDSVYYDANMGHMLTSVSEEDAHILWVTAK

Sequences:

>Translated_207_residues
MAESIYDEYPSMTLAKEQQDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQ
IDMPQLFEPPRKKVATGRRDVTKKKEGKPHPTQTYEHELLATQLSNKKMMPFKSQIRARSFDEYKDWVRHDGEEFLLILS
GEVMFYSEFYEPVVLSEGDSVYYDANMGHMLTSVSEEDAHILWVTAK
>Mature_206_residues
AESIYDEYPSMTLAKEQQDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQI
DMPQLFEPPRKKVATGRRDVTKKKEGKPHPTQTYEHELLATQLSNKKMMPFKSQIRARSFDEYKDWVRHDGEEFLLILSG
EVMFYSEFYEPVVLSEGDSVYYDANMGHMLTSVSEEDAHILWVTAK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23858; Mature: 23727

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESIYDEYPSMTLAKEQQDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKI
CCCCHHHHCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ENEQISPTFQAMQKLAHGLQIDMPQLFEPPRKKVATGRRDVTKKKEGKPHPTQTYEHELL
CCCCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHH
ATQLSNKKMMPFKSQIRARSFDEYKDWVRHDGEEFLLILSGEVMFYSEFYEPVVLSEGDS
HHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCEEEEHHHCCCEEEECCCE
VYYDANMGHMLTSVSEEDAHILWVTAK
EEEECCCCHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure 
AESIYDEYPSMTLAKEQQDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKI
CCCHHHHCCCCEEHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ENEQISPTFQAMQKLAHGLQIDMPQLFEPPRKKVATGRRDVTKKKEGKPHPTQTYEHELL
CCCCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHH
ATQLSNKKMMPFKSQIRARSFDEYKDWVRHDGEEFLLILSGEVMFYSEFYEPVVLSEGDS
HHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCEEEEHHHCCCEEEECCCE
VYYDANMGHMLTSVSEEDAHILWVTAK
EEEECCCCHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA