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The map label for this gene is yqhC [H]

Identifier: 156977160

GI number: 156977160

Start: 1134304

End: 1135185

Strand: Reverse

Name: yqhC [H]

Synonym: VIBHAR_05946

Alternate gene names: 156977160

Gene position: 1135185-1134304 (Counterclockwise)

Preceding gene: 156977162

Following gene: 156977159

Centisome position: 51.51

GC content: 46.26

Gene sequence:

>882_bases
ATGAAGACACTTGCTGAGAGCATGCAGCAATATGCGACGAAATTCGGCTTAGACGATCTCGAAGGGATTAAAGAAACCGC
CATTGATGGGGTGTGGTTTTACCGCAGTAGTAAAGGGAATAATCGCCAACCTTTTGTGTACCAGTCTGGCATTATCGTGT
TGGGACAAGGGTACAAGAACATCCATATTGGCCAAAGTCCGGTGCGTTATGGACCCGATGATTATTTGGTGGTTGGTGTC
CCAATGCCGCTCGAGTGTGAAGCGATTGCCGTCGACAATGAACCCTTGCTAGGTATCTCTATTGATATTTCTCCAGCACT
GCTACAAAAGCTCGTGAAGAAGCTGGAATCACAACGCTTTACTAATGTGTATGAAGACGCTACTCGCTGCGGGTTGAAGT
CGGTACAAATGAACGAGCAAATGCTTGATGCTTGTAAACGCCTGATGACGACGTTATGTGACGAGCGAGAGGTAGCCATG
CTCGGTGAGATGCTTTTAGAAGAGATTGTTTACCGAGCATTGGTAAGCGAATCTGGCCATGTTCTCTTTGAATTGGCGCA
TCAAGAAGGCTCTTATGCTCGTGTAGCTAAAGCTCTTAATCGTGTTCATCGGGAATATCATGAACAACTGAATGTACAAT
CCTTGGCGGAAGAGGCGAACATGAGCGTATCTGCGTTTCATCAAGCCTTCAGAAGTGTCACTCTAGAGTCGCCTTTGCAG
TACATAAAAAAGGTGCGTCTCAATAAAGCGCGTGAACTTATCCAAGTAGAAGGGCGCAGAGTGAATGATGCCGCGAGGCT
AGTAGGCTATAGCAGTCCGTCACAGTTCAGTCGCGAATATAAAAGACATTTTAATGAAACACCCAGAGCAACAAAGGCTT
AG

Upstream 100 bases:

>100_bases
CTGCAAATTTGTTGCCTATTCCTACATAATTGCGTGAATTGCTCTGGAACTGAGTGACGAACTCCAAGTATAGTGCGTGA
CAAATGAATGGAGTGACAAA

Downstream 100 bases:

>100_bases
TGATCTTTATTTCAATATTAGGACTTTTTTTCTCTTTTTTATTAATTTGCGATCGACATATTTATTTGAGTAGTGAAATT
AGTTGTCGGTGCAAAATAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKTLAESMQQYATKFGLDDLEGIKETAIDGVWFYRSSKGNNRQPFVYQSGIIVLGQGYKNIHIGQSPVRYGPDDYLVVGV
PMPLECEAIAVDNEPLLGISIDISPALLQKLVKKLESQRFTNVYEDATRCGLKSVQMNEQMLDACKRLMTTLCDEREVAM
LGEMLLEEIVYRALVSESGHVLFELAHQEGSYARVAKALNRVHREYHEQLNVQSLAEEANMSVSAFHQAFRSVTLESPLQ
YIKKVRLNKARELIQVEGRRVNDAARLVGYSSPSQFSREYKRHFNETPRATKA

Sequences:

>Translated_293_residues
MKTLAESMQQYATKFGLDDLEGIKETAIDGVWFYRSSKGNNRQPFVYQSGIIVLGQGYKNIHIGQSPVRYGPDDYLVVGV
PMPLECEAIAVDNEPLLGISIDISPALLQKLVKKLESQRFTNVYEDATRCGLKSVQMNEQMLDACKRLMTTLCDEREVAM
LGEMLLEEIVYRALVSESGHVLFELAHQEGSYARVAKALNRVHREYHEQLNVQSLAEEANMSVSAFHQAFRSVTLESPLQ
YIKKVRLNKARELIQVEGRRVNDAARLVGYSSPSQFSREYKRHFNETPRATKA
>Mature_293_residues
MKTLAESMQQYATKFGLDDLEGIKETAIDGVWFYRSSKGNNRQPFVYQSGIIVLGQGYKNIHIGQSPVRYGPDDYLVVGV
PMPLECEAIAVDNEPLLGISIDISPALLQKLVKKLESQRFTNVYEDATRCGLKSVQMNEQMLDACKRLMTTLCDEREVAM
LGEMLLEEIVYRALVSESGHVLFELAHQEGSYARVAKALNRVHREYHEQLNVQSLAEEANMSVSAFHQAFRSVTLESPLQ
YIKKVRLNKARELIQVEGRRVNDAARLVGYSSPSQFSREYKRHFNETPRATKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=248, Percent_Identity=39.1129032258064, Blast_Score=184, Evalue=8e-48,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33209; Mature: 33209

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLAESMQQYATKFGLDDLEGIKETAIDGVWFYRSSKGNNRQPFVYQSGIIVLGQGYKN
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCEEEEECCCCE
IHIGQSPVRYGPDDYLVVGVPMPLECEAIAVDNEPLLGISIDISPALLQKLVKKLESQRF
EECCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHH
TNVYEDATRCGLKSVQMNEQMLDACKRLMTTLCDEREVAMLGEMLLEEIVYRALVSESGH
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
VLFELAHQEGSYARVAKALNRVHREYHEQLNVQSLAEEANMSVSAFHQAFRSVTLESPLQ
EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YIKKVRLNKARELIQVEGRRVNDAARLVGYSSPSQFSREYKRHFNETPRATKA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKTLAESMQQYATKFGLDDLEGIKETAIDGVWFYRSSKGNNRQPFVYQSGIIVLGQGYKN
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCEEEECCEEEEECCCCE
IHIGQSPVRYGPDDYLVVGVPMPLECEAIAVDNEPLLGISIDISPALLQKLVKKLESQRF
EECCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHH
TNVYEDATRCGLKSVQMNEQMLDACKRLMTTLCDEREVAMLGEMLLEEIVYRALVSESGH
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
VLFELAHQEGSYARVAKALNRVHREYHEQLNVQSLAEEANMSVSAFHQAFRSVTLESPLQ
EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YIKKVRLNKARELIQVEGRRVNDAARLVGYSSPSQFSREYKRHFNETPRATKA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]