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The map label for this gene is ybjD [H]

Identifier: 156977129

GI number: 156977129

Start: 1105879

End: 1107513

Strand: Direct

Name: ybjD [H]

Synonym: VIBHAR_05915

Alternate gene names: 156977129

Gene position: 1105879-1107513 (Clockwise)

Preceding gene: 156977127

Following gene: 156977131

Centisome position: 50.18

GC content: 47.52

Gene sequence:

>1635_bases
ATGAGACTAGAACGCATCGAAATCTCTGGGTTTAGAGGCATCAAACGCCTTTCACTCTCTTTTGACGAACTGACAACTTT
GATCGGTGAGAATACATGGGGTAAGTCTTCCCTACTCGACGCTTTGTCTCTCGCCCTGCCCGCTGACGGTTCTCTTTATC
AGTTCCAAATGACGGACTTTCACGTCGACTACGCAATATCACACCCACAAACCCAGCATCTTCAAATCGTACTTTGCTTC
AAAGCGCAGGATAAGCAAGAAGTAAATGCTGGGCGCTACAGACGAATCAAACCAACATGGTGTGTTAACGAAAATAACGA
GCACGTGATTTATTACCGTTTAAGCGCAAGCAGAGACGGCCATAACATCACCTCCAAATACGCATTCTTGGACTCCGATG
GTGAAGACAAACAACTGCACCATTCTGAAAAACTCGCAATAGAGTTGATGACACTGCATCCCGTGATCCGGTTGCGTGAC
TCACGCCGTTTCCCTGAGCCAAATCACATCAATGGTGACAACAAGAACGCTCGCATCGAGAAGCGCATCAATAACACCTG
CCGCCGCCTATTTGCCATGCCTGGTCATGTGAACAAAGGTGAAGTGCGCAGCAGCCTTGATTCAATGCACACTCTGGTCG
AGCACTACTTTGCATTCCGAAGTGTGAAAAAAGGTCACCCGAGAAAACCGCGAGATGGCTTGTTCTACGCCAGTCCGTCA
GCAGAAAAAGGATTGTCGCAGTTTTTAAGGGAAACAAACAACAAACAAACCCGACTGCTACTTATGGGGTTGTTGAACGC
GTACCTACAAGCAAAAGGTCCCACCGATTTAAGACGTTGCGCTCGCCCCATCTTGATCATTGAAGATCCAGAGGGTCGTT
TGCACCCGACTCACTTATCTCGCGCTTGGAGTTTGTTGCAGTTACTACCGATGCAGAAGATCCTTACGACAAACAGTGCG
CGTTTACTTGGCTCCGTACCTTTGGCATCAATTCGTCGTTTGGTTCGTTTATCGGATCGAACCATCGCAAAATCGCTCAA
TACTAATCACTTTAGTGTCGACCAATTACGACGTATTGGTTTCCATATTCGTTTTCATCGCGCCGGCGCCCTATTTGCCC
GTTGCTGGTTATTGGTCGAAGGAGAAACGGAAGTCTGGCTATTTAACGAGTTGGCACGCCAGTGCGGTTATGATCTCGCA
GCAGAAGGAGTTCAAATCGTTGAATTTGCCCAATCAGGTCTGAAGTCATTAGTTAAAGTGGCGCAAGAGTTTGGTATCGA
CTGGCATGTGGTGACTGACGGCGACCCTGCTGGTAAAAAATACGCGCACACAGTGAGAGTCCATTTAAATAACGACCAAG
AGCGTCATCGCCTTACCGAGCTACCCGATAGAGATATCGAGCACTTCCTCTATAACAATGGCTTTGAAATTTTCTTTAAG
GACATCATCAAAGTTCCTCGTGATCATCCTATCCCAGCTAAGAAAGTCGTAAACCGCGTTTTGAAGAAACAAGCAAAACC
GGATCTCGCACTCGCAATTGTTGCCCATTGCGAAGAGCGTGGCGTAGATTGCATCCCCGTACTTTTGCGCTGGACGCTAA
AACGCGTGGTAACTATGGCAAACGGGAATACGTAA

Upstream 100 bases:

>100_bases
ATTTTGTGAACTGAGCTTAACTTGACATGATCAATTTCATATATGCTTATGAGGAGCGAAAGAACTCTCGATAATTCAAA
TAATTGCAAGGAGGAGTGAG

Downstream 100 bases:

>100_bases
AGAGCGATACCCAAAAATAGACAGAATCGAGTAGGAGGAGGCCTCACGGCCTCCGTCCTCTCACACCACCGTACAAGCGT
GGGTCGCATACGGCGGTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MRLERIEISGFRGIKRLSLSFDELTTLIGENTWGKSSLLDALSLALPADGSLYQFQMTDFHVDYAISHPQTQHLQIVLCF
KAQDKQEVNAGRYRRIKPTWCVNENNEHVIYYRLSASRDGHNITSKYAFLDSDGEDKQLHHSEKLAIELMTLHPVIRLRD
SRRFPEPNHINGDNKNARIEKRINNTCRRLFAMPGHVNKGEVRSSLDSMHTLVEHYFAFRSVKKGHPRKPRDGLFYASPS
AEKGLSQFLRETNNKQTRLLLMGLLNAYLQAKGPTDLRRCARPILIIEDPEGRLHPTHLSRAWSLLQLLPMQKILTTNSA
RLLGSVPLASIRRLVRLSDRTIAKSLNTNHFSVDQLRRIGFHIRFHRAGALFARCWLLVEGETEVWLFNELARQCGYDLA
AEGVQIVEFAQSGLKSLVKVAQEFGIDWHVVTDGDPAGKKYAHTVRVHLNNDQERHRLTELPDRDIEHFLYNNGFEIFFK
DIIKVPRDHPIPAKKVVNRVLKKQAKPDLALAIVAHCEERGVDCIPVLLRWTLKRVVTMANGNT

Sequences:

>Translated_544_residues
MRLERIEISGFRGIKRLSLSFDELTTLIGENTWGKSSLLDALSLALPADGSLYQFQMTDFHVDYAISHPQTQHLQIVLCF
KAQDKQEVNAGRYRRIKPTWCVNENNEHVIYYRLSASRDGHNITSKYAFLDSDGEDKQLHHSEKLAIELMTLHPVIRLRD
SRRFPEPNHINGDNKNARIEKRINNTCRRLFAMPGHVNKGEVRSSLDSMHTLVEHYFAFRSVKKGHPRKPRDGLFYASPS
AEKGLSQFLRETNNKQTRLLLMGLLNAYLQAKGPTDLRRCARPILIIEDPEGRLHPTHLSRAWSLLQLLPMQKILTTNSA
RLLGSVPLASIRRLVRLSDRTIAKSLNTNHFSVDQLRRIGFHIRFHRAGALFARCWLLVEGETEVWLFNELARQCGYDLA
AEGVQIVEFAQSGLKSLVKVAQEFGIDWHVVTDGDPAGKKYAHTVRVHLNNDQERHRLTELPDRDIEHFLYNNGFEIFFK
DIIKVPRDHPIPAKKVVNRVLKKQAKPDLALAIVAHCEERGVDCIPVLLRWTLKRVVTMANGNT
>Mature_544_residues
MRLERIEISGFRGIKRLSLSFDELTTLIGENTWGKSSLLDALSLALPADGSLYQFQMTDFHVDYAISHPQTQHLQIVLCF
KAQDKQEVNAGRYRRIKPTWCVNENNEHVIYYRLSASRDGHNITSKYAFLDSDGEDKQLHHSEKLAIELMTLHPVIRLRD
SRRFPEPNHINGDNKNARIEKRINNTCRRLFAMPGHVNKGEVRSSLDSMHTLVEHYFAFRSVKKGHPRKPRDGLFYASPS
AEKGLSQFLRETNNKQTRLLLMGLLNAYLQAKGPTDLRRCARPILIIEDPEGRLHPTHLSRAWSLLQLLPMQKILTTNSA
RLLGSVPLASIRRLVRLSDRTIAKSLNTNHFSVDQLRRIGFHIRFHRAGALFARCWLLVEGETEVWLFNELARQCGYDLA
AEGVQIVEFAQSGLKSLVKVAQEFGIDWHVVTDGDPAGKKYAHTVRVHLNNDQERHRLTELPDRDIEHFLYNNGFEIFFK
DIIKVPRDHPIPAKKVVNRVLKKQAKPDLALAIVAHCEERGVDCIPVLLRWTLKRVVTMANGNT

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=555, Percent_Identity=43.4234234234234, Blast_Score=410, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 62374; Mature: 62374

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLERIEISGFRGIKRLSLSFDELTTLIGENTWGKSSLLDALSLALPADGSLYQFQMTDF
CCCEEEEECCCCCHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEE
HVDYAISHPQTQHLQIVLCFKAQDKQEVNAGRYRRIKPTWCVNENNEHVIYYRLSASRDG
EEEEEECCCCCCCEEEEEEEECCCCHHCCCCCEEECCCEEEECCCCCEEEEEEEECCCCC
HNITSKYAFLDSDGEDKQLHHSEKLAIELMTLHPVIRLRDSRRFPEPNHINGDNKNARIE
CCCCCEEEEECCCCCCCHHHCCHHHEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
KRINNTCRRLFAMPGHVNKGEVRSSLDSMHTLVEHYFAFRSVKKGHPRKPRDGLFYASPS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
AEKGLSQFLRETNNKQTRLLLMGLLNAYLQAKGPTDLRRCARPILIIEDPEGRLHPTHLS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCHHHHH
RAWSLLQLLPMQKILTTNSARLLGSVPLASIRRLVRLSDRTIAKSLNTNHFSVDQLRRIG
HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
FHIRFHRAGALFARCWLLVEGETEVWLFNELARQCGYDLAAEGVQIVEFAQSGLKSLVKV
CEEEEECCHHHEEEEEEEECCCCCEEHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH
AQEFGIDWHVVTDGDPAGKKYAHTVRVHLNNDQERHRLTELPDRDIEHFLYNNGFEIFFK
HHHHCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCHHHHHH
DIIKVPRDHPIPAKKVVNRVLKKQAKPDLALAIVAHCEERGVDCIPVLLRWTLKRVVTMA
HHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
NGNT
CCCC
>Mature Secondary Structure
MRLERIEISGFRGIKRLSLSFDELTTLIGENTWGKSSLLDALSLALPADGSLYQFQMTDF
CCCEEEEECCCCCHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEE
HVDYAISHPQTQHLQIVLCFKAQDKQEVNAGRYRRIKPTWCVNENNEHVIYYRLSASRDG
EEEEEECCCCCCCEEEEEEEECCCCHHCCCCCEEECCCEEEECCCCCEEEEEEEECCCCC
HNITSKYAFLDSDGEDKQLHHSEKLAIELMTLHPVIRLRDSRRFPEPNHINGDNKNARIE
CCCCCEEEEECCCCCCCHHHCCHHHEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
KRINNTCRRLFAMPGHVNKGEVRSSLDSMHTLVEHYFAFRSVKKGHPRKPRDGLFYASPS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
AEKGLSQFLRETNNKQTRLLLMGLLNAYLQAKGPTDLRRCARPILIIEDPEGRLHPTHLS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCHHHHH
RAWSLLQLLPMQKILTTNSARLLGSVPLASIRRLVRLSDRTIAKSLNTNHFSVDQLRRIG
HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
FHIRFHRAGALFARCWLLVEGETEVWLFNELARQCGYDLAAEGVQIVEFAQSGLKSLVKV
CEEEEECCHHHEEEEEEEECCCCCEEHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHH
AQEFGIDWHVVTDGDPAGKKYAHTVRVHLNNDQERHRLTELPDRDIEHFLYNNGFEIFFK
HHHHCCEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCHHHHHH
DIIKVPRDHPIPAKKVVNRVLKKQAKPDLALAIVAHCEERGVDCIPVLLRWTLKRVVTMA
HHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
NGNT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]