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The map label for this gene is hcpA [H]

Identifier: 156977086

GI number: 156977086

Start: 1061396

End: 1061896

Strand: Reverse

Name: hcpA [H]

Synonym: VIBHAR_05871

Alternate gene names: 156977086

Gene position: 1061896-1061396 (Counterclockwise)

Preceding gene: 156977089

Following gene: 156977085

Centisome position: 48.18

GC content: 45.31

Gene sequence:

>501_bases
ATGTCTATCAAAGGTGAAACTCAAGGTCACATCACTAAAGATACTTACTCTGCAGATTCTGTAGGTAACACATGGCAAGA
AGCTCACGTTGATGAGTTCCTAGTTCAAGAACTAGACCACGTACTAACAGTACCACGTGACCCACAAAGTGGTCAGCCTA
CTGGTCAACGTGTTCACCGTCCACTTGTTGTAACTAAAGTTCAAGACCGTTGTTCTCCACTACTATTCAACGCACTAGTA
TCTGGCGAAAAACTTCCTGAGTGTGTGATCCGTTTCTACCGTACTTCAGTTCAAGGTAAGCAAGAGCACTACTACTCAAT
CAAACTGATTGATGCACTACTAGTAGACATCCAAACTCGCATGAACCACTGTCAAGACGCTGCAACAGCAGACCGCGTGA
CAGAAGAAGTTCTTAAGCTGACTTACCGTGCAATCGAAGTAACTCACGAAAACTGTGGTACAGCTGGTAACGACGACTGG
CGTGCTCCACGCGAAGCATAA

Upstream 100 bases:

>100_bases
ACGGAGTTTGATTATACCAAGTAGTCGCGGTGATAAGCGATTTGGTGATTAAACAAATACAGATTTAAAAAAGGAAATAA
CGATGCCAACTCCAGCATAT

Downstream 100 bases:

>100_bases
TTGCTTTTTGCGTAAAGATTCAGGGCCAACAATTGTTGGCCCTAATTCGATTATTTGTATCAGGTAAAAGATATGGTGAA
TGACGTAGAATTTAAATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSIKGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRCSPLLFNALV
SGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKLTYRAIEVTHENCGTAGNDDW
RAPREA

Sequences:

>Translated_166_residues
MSIKGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRCSPLLFNALV
SGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKLTYRAIEVTHENCGTAGNDDW
RAPREA
>Mature_165_residues
SIKGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPLVVTKVQDRCSPLLFNALVS
GEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTRMNHCQDAATADRVTEEVLKLTYRAIEVTHENCGTAGNDDWR
APREA

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18745; Mature: 18614

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHR
CCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
PLVVTKVQDRCSPLLFNALVSGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTR
CHHEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
MNHCQDAATADRVTEEVLKLTYRAIEVTHENCGTAGNDDWRAPREA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIKGETQGHITKDTYSADSVGNTWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHR
CCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHC
PLVVTKVQDRCSPLLFNALVSGEKLPECVIRFYRTSVQGKQEHYYSIKLIDALLVDIQTR
CHHEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
MNHCQDAATADRVTEEVLKLTYRAIEVTHENCGTAGNDDWRAPREA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]