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The map label for this gene is yjdF [H]

Identifier: 156977024

GI number: 156977024

Start: 997653

End: 998249

Strand: Direct

Name: yjdF [H]

Synonym: VIBHAR_05809

Alternate gene names: 156977024

Gene position: 997653-998249 (Clockwise)

Preceding gene: 156977023

Following gene: 156977025

Centisome position: 45.27

GC content: 45.39

Gene sequence:

>597_bases
ATGAAAAGTACTTCTACTTTATTAGGTTTAACGATTTTCTACGCGATCGTTTTTTTGTTTTCTGCGTTAGAACCAAATTC
CCGCGCGGTGTGGTTTGCAGAGATCGTTCCTGCCATCGGTATTCTTGTGGCCATTTGGGCATTGTCCATTCGCTACCAAT
TCAGTAACACCGCTTATGTGCTGATGTTTATCTGGCTGTGTCTTCATACGATTGGCGCCAAATATACCTTTGCAGAGGTG
CCTTTTGATTGGTTCAACAACTTGATAGGTTCGGAGCGCAATAACTTTGACCGCGTTGCTCACTTTTCTATCGGTCTCTA
TGCGTACCCTATTGCTGAATACCTAATTAACAAGAAAAAAGTCAGCGCTAAATTGGCTTGTTGGTTCGCGCTCTTTGCCA
TTATGTCACTGGCAGCAGGCTATGAAATCATTGAATGGTGGTATGCCGCAATCGCTGGCGGTGATGAGGGTATTGCCTTC
CTAGGCTCCCAAGGAGATATCTGGGACGCCCAGAAAGACATGTTATGTGACACGATGGGTGCCATATTATCTTTGGTTTT
ACTGACAACTCAGCGTCGACTGGCGAAGCCACTCTAG

Upstream 100 bases:

>100_bases
ACATAAAAAGTAAGCATTACCCCTGCAAAAGAAACAATTGCACACCGTACAATTAAGTGTAATCATAAACACAGTTTTCA
ATTGAAGGATCAATTTCTCT

Downstream 100 bases:

>100_bases
ATAAGGGTTAAACCCTTCTACAATTGGGACTTGCACGATTTGAGCAACTTCATACTCGTGCAGGTCTTTTATTTTGTCTT
CAACCAAAGCGTAAAGATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MKSTSTLLGLTIFYAIVFLFSALEPNSRAVWFAEIVPAIGILVAIWALSIRYQFSNTAYVLMFIWLCLHTIGAKYTFAEV
PFDWFNNLIGSERNNFDRVAHFSIGLYAYPIAEYLINKKKVSAKLACWFALFAIMSLAAGYEIIEWWYAAIAGGDEGIAF
LGSQGDIWDAQKDMLCDTMGAILSLVLLTTQRRLAKPL

Sequences:

>Translated_198_residues
MKSTSTLLGLTIFYAIVFLFSALEPNSRAVWFAEIVPAIGILVAIWALSIRYQFSNTAYVLMFIWLCLHTIGAKYTFAEV
PFDWFNNLIGSERNNFDRVAHFSIGLYAYPIAEYLINKKKVSAKLACWFALFAIMSLAAGYEIIEWWYAAIAGGDEGIAF
LGSQGDIWDAQKDMLCDTMGAILSLVLLTTQRRLAKPL
>Mature_198_residues
MKSTSTLLGLTIFYAIVFLFSALEPNSRAVWFAEIVPAIGILVAIWALSIRYQFSNTAYVLMFIWLCLHTIGAKYTFAEV
PFDWFNNLIGSERNNFDRVAHFSIGLYAYPIAEYLINKKKVSAKLACWFALFAIMSLAAGYEIIEWWYAAIAGGDEGIAF
LGSQGDIWDAQKDMLCDTMGAILSLVLLTTQRRLAKPL

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=181, Percent_Identity=31.4917127071823, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22233; Mature: 22233

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTSTLLGLTIFYAIVFLFSALEPNSRAVWFAEIVPAIGILVAIWALSIRYQFSNTAYV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LMFIWLCLHTIGAKYTFAEVPFDWFNNLIGSERNNFDRVAHFSIGLYAYPIAEYLINKKK
HHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VSAKLACWFALFAIMSLAAGYEIIEWWYAAIAGGDEGIAFLGSQGDIWDAQKDMLCDTMG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
AILSLVLLTTQRRLAKPL
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSTSTLLGLTIFYAIVFLFSALEPNSRAVWFAEIVPAIGILVAIWALSIRYQFSNTAYV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LMFIWLCLHTIGAKYTFAEVPFDWFNNLIGSERNNFDRVAHFSIGLYAYPIAEYLINKKK
HHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VSAKLACWFALFAIMSLAAGYEIIEWWYAAIAGGDEGIAFLGSQGDIWDAQKDMLCDTMG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHH
AILSLVLLTTQRRLAKPL
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]