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The map label for this gene is yhaJ [H]

Identifier: 156977003

GI number: 156977003

Start: 974290

End: 975177

Strand: Reverse

Name: yhaJ [H]

Synonym: VIBHAR_05788

Alternate gene names: 156977003

Gene position: 975177-974290 (Counterclockwise)

Preceding gene: 156977005

Following gene: 156977001

Centisome position: 44.25

GC content: 48.09

Gene sequence:

>888_bases
GTGCAGAGCCCAATCACTTTAGAAGCACTTCATATTCTTGATGCTATTGATAGAAGAGGAAGTTTTGCTGCTGCCGCGAA
CGAGTTAGATCGCGCGCCTTCGTCACTCAGTTATCAAATACAAAAGCTTGAACAAGACCTTGATATCAACATTTTTGACC
GTTCAGGCCACAAAGCACATTTCACTGAAGCGGGAAAATTGATACTTGAACGTGGCAGGGTGATTCTACAAGCAAGCGAA
AAGCTCGTTAATGACGCCACCTTGCTCGCTAATGGGTGGGAGCTCGATATTACGGTCGCGTTTGATGGCATTATTCCGAT
TTCAAACTTCTTCCCAATGGTCGACGCGCTAGCCAACGTAAGTAGTACGCGGGTAAGGTTGCAAGAAGAGATTCTCGCGG
GGGGATGGGAGTCACTCAACGCAGGCCGTGCAGATCTGCTCGTTTGTCCTCCGCTAGACACTTTACCTCAGGACGTAAAG
GCAGAAAACATAGGTAAAATGAGCATGGTATGGGTGGCTGCATCCGATCACTATGTACATAAACGGAGTGGTGATTTCGA
TGATGCTGCGAGGGCGAAATACCGAGTGATTGTGATCGCGGATACGGCAAGAGAGCAGCCAGCAATGTCGATTAATGTTA
TGCAGAAACAGCCAAGGCTCACCGTCACGAACTTTCCCGCGAAAGTGGAAGCACTGACTTCCGGATTGGGGATAGGCACT
CTCCCAAGCCAAATTGCTCAGCCTTTGATTGAAAGTGGCGCCTTAAAGCGAATCGAAGGTACGGAAGATCAGCCGGTCGA
CATTATTCTTGCGTGGCGCAGAAACGCGATGGGTGAAGCGAAATCATGGTGCGTTCAATACTTAAAGAAGAATTGGAAAT
TAAAGTGA

Upstream 100 bases:

>100_bases
TAGTCTTTAAATATCAATCTGTTATATTAGTTGAAGCTACATTTTTAATTTTTTCTCAAACACCACTACTGTGATAGCTA
TCACATAAATAGGAGTTTCT

Downstream 100 bases:

>100_bases
TGCTGTAACTTTATTTTAGTTTTGCAAGGCAAACAGTAAGTTCGCTCAACAAAGGGACGCGATTGAGCGTCCCTTTATTT
ATTTTTAATCAGTTATGCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MQSPITLEALHILDAIDRRGSFAAAANELDRAPSSLSYQIQKLEQDLDINIFDRSGHKAHFTEAGKLILERGRVILQASE
KLVNDATLLANGWELDITVAFDGIIPISNFFPMVDALANVSSTRVRLQEEILAGGWESLNAGRADLLVCPPLDTLPQDVK
AENIGKMSMVWVAASDHYVHKRSGDFDDAARAKYRVIVIADTAREQPAMSINVMQKQPRLTVTNFPAKVEALTSGLGIGT
LPSQIAQPLIESGALKRIEGTEDQPVDIILAWRRNAMGEAKSWCVQYLKKNWKLK

Sequences:

>Translated_295_residues
MQSPITLEALHILDAIDRRGSFAAAANELDRAPSSLSYQIQKLEQDLDINIFDRSGHKAHFTEAGKLILERGRVILQASE
KLVNDATLLANGWELDITVAFDGIIPISNFFPMVDALANVSSTRVRLQEEILAGGWESLNAGRADLLVCPPLDTLPQDVK
AENIGKMSMVWVAASDHYVHKRSGDFDDAARAKYRVIVIADTAREQPAMSINVMQKQPRLTVTNFPAKVEALTSGLGIGT
LPSQIAQPLIESGALKRIEGTEDQPVDIILAWRRNAMGEAKSWCVQYLKKNWKLK
>Mature_295_residues
MQSPITLEALHILDAIDRRGSFAAAANELDRAPSSLSYQIQKLEQDLDINIFDRSGHKAHFTEAGKLILERGRVILQASE
KLVNDATLLANGWELDITVAFDGIIPISNFFPMVDALANVSSTRVRLQEEILAGGWESLNAGRADLLVCPPLDTLPQDVK
AENIGKMSMVWVAASDHYVHKRSGDFDDAARAKYRVIVIADTAREQPAMSINVMQKQPRLTVTNFPAKVEALTSGLGIGT
LPSQIAQPLIESGALKRIEGTEDQPVDIILAWRRNAMGEAKSWCVQYLKKNWKLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=287, Percent_Identity=45.993031358885, Blast_Score=290, Evalue=8e-80,
Organism=Escherichia coli, GI87082024, Length=285, Percent_Identity=36.140350877193, Blast_Score=180, Evalue=9e-47,
Organism=Escherichia coli, GI1787949, Length=284, Percent_Identity=28.5211267605634, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1786713, Length=277, Percent_Identity=24.187725631769, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786508, Length=296, Percent_Identity=22.6351351351351, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32554; Mature: 32554

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSPITLEALHILDAIDRRGSFAAAANELDRAPSSLSYQIQKLEQDLDINIFDRSGHKAH
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCEEE
FTEAGKLILERGRVILQASEKLVNDATLLANGWELDITVAFDGIIPISNFFPMVDALANV
HHHHHHHHHHCCCEEEEHHHHHHCCCEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHCC
SSTRVRLQEEILAGGWESLNAGRADLLVCPPLDTLPQDVKAENIGKMSMVWVAASDHYVH
HHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCHHCCCCCCCEEEEEEECCCCEEE
KRSGDFDDAARAKYRVIVIADTAREQPAMSINVMQKQPRLTVTNFPAKVEALTSGLGIGT
CCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHCCCCCCC
LPSQIAQPLIESGALKRIEGTEDQPVDIILAWRRNAMGEAKSWCVQYLKKNWKLK
CHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQSPITLEALHILDAIDRRGSFAAAANELDRAPSSLSYQIQKLEQDLDINIFDRSGHKAH
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCEEE
FTEAGKLILERGRVILQASEKLVNDATLLANGWELDITVAFDGIIPISNFFPMVDALANV
HHHHHHHHHHCCCEEEEHHHHHHCCCEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHCC
SSTRVRLQEEILAGGWESLNAGRADLLVCPPLDTLPQDVKAENIGKMSMVWVAASDHYVH
HHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCCCCCCHHCCCCCCCEEEEEEECCCCEEE
KRSGDFDDAARAKYRVIVIADTAREQPAMSINVMQKQPRLTVTNFPAKVEALTSGLGIGT
CCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHCCCCCCC
LPSQIAQPLIESGALKRIEGTEDQPVDIILAWRRNAMGEAKSWCVQYLKKNWKLK
CHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]