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The map label for this gene is insF1 [C]

Identifier: 156976957

GI number: 156976957

Start: 944107

End: 944733

Strand: Direct

Name: insF1 [C]

Synonym: VIBHAR_05742

Alternate gene names: 156976957

Gene position: 944107-944733 (Clockwise)

Preceding gene: 156976956

Following gene: 156976958

Centisome position: 42.84

GC content: 48.48

Gene sequence:

>627_bases
ATGATTGACGAAATTCACCTTCGGTATCCGTTCATGGGGAGCAGACGCATTCGAAATGAGATGGCTAAAAAAGGCCATAA
CGTTAATCGTAAACGTGTCGTTCGGCTCATGCGAGACATGGGCATTGGGGCTATTTACCCCAAGCCTAGAACGACCCTAG
CGAACAAAGCACACAAGGTTTATCCCTACCTTTTGCGTGATATCGAAGTCACTTACCCGAACCAAGCTTGGGCGATTGAC
ATCACGTATATCCCGATGGCTAAGGGGTTCCTGTATTTAGTCGCCATTATCGACTGGTATAGCCGAAAGGTGCTGTCTTG
GCGGCTATCCAACACCATGGACACGAGCTTTTGTATCGAAGCCCTTGAAGACGCGCTTAAACATTATGGCCCGCCAGATA
TCTTCAACTCAGATCAAGGCAGTCAGTTTACCAGCACCGAATTCACACAGAAGCTACTCGACCATGGAGTCAGGATAAGT
ATGGATGGGAAAGGACGCTGGGTCGACAATGTTTTCATAGAGCGATTATGGAGAAGCCTGAAATATGAGGAGGTTTACTT
AAAAGCTTACACCACGCCCCGAGAAGCAGAGCTTGAAATCGGCCACTACCCCCCTCTGGCAGGATAG

Upstream 100 bases:

>100_bases
ATTGCCAATAAAACGCCAGTGTGAGCTTCTCAGTATTGCTCGCTCTACTGCTTACTATCAACCCATAGGACTCTCTGCTG
AAGAGATTGTACTACGGCGC

Downstream 100 bases:

>100_bases
TTGTCACTGTTAAAATTTAACCAGTTTGGGTGGTAATGAGTGAGTTTTGAATCGCATTCCAACAGAAAGAAAAGAAGCCA
TATTGAAGAAGCTACTGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIGAIYPKPRTTLANKAHKVYPYLLRDIEVTYPNQAWAID
ITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIEALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRIS
MDGKGRWVDNVFIERLWRSLKYEEVYLKAYTTPREAELEIGHYPPLAG

Sequences:

>Translated_208_residues
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIGAIYPKPRTTLANKAHKVYPYLLRDIEVTYPNQAWAID
ITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIEALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRIS
MDGKGRWVDNVFIERLWRSLKYEEVYLKAYTTPREAELEIGHYPPLAG
>Mature_208_residues
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIGAIYPKPRTTLANKAHKVYPYLLRDIEVTYPNQAWAID
ITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIEALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRIS
MDGKGRWVDNVFIERLWRSLKYEEVYLKAYTTPREAELEIGHYPPLAG

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=196, Percent_Identity=33.1632653061224, Blast_Score=99, Evalue=3e-21,
Organism=Escherichia coli, GI1788405, Length=179, Percent_Identity=32.9608938547486, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787263, Length=179, Percent_Identity=32.9608938547486, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786753, Length=179, Percent_Identity=32.9608938547486, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786570, Length=179, Percent_Identity=32.9608938547486, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786490, Length=179, Percent_Identity=32.9608938547486, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789981, Length=195, Percent_Identity=29.7435897435897, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 24351; Mature: 24351

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIGAIYPKPRTTLANKAHKV
CCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
YPYLLRDIEVTYPNQAWAIDITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIE
HHHHHHHEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRISMDGKGRWVDNVFIERLWRSL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHC
KYEEVYLKAYTTPREAELEIGHYPPLAG
CHHHEEEEEECCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIGAIYPKPRTTLANKAHKV
CCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
YPYLLRDIEVTYPNQAWAIDITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIE
HHHHHHHEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRISMDGKGRWVDNVFIERLWRSL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHC
KYEEVYLKAYTTPREAELEIGHYPPLAG
CHHHEEEEEECCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2159625; 2824781 [H]