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The map label for this gene is cph2 [H]

Identifier: 156976944

GI number: 156976944

Start: 931186

End: 932157

Strand: Direct

Name: cph2 [H]

Synonym: VIBHAR_05729

Alternate gene names: 156976944

Gene position: 931186-932157 (Clockwise)

Preceding gene: 156976942

Following gene: 156976946

Centisome position: 42.25

GC content: 45.37

Gene sequence:

>972_bases
ATGGAACGCGCTATGCAACCGACAGGGACCTCTATGCGCATTCTCCTGGTTGATGACGTACAACTAGACCGAATGCAGTT
GGCTATACGATTAAAACAGCAAGGTCACATTGTAAAAGCCGTTGGCAACGGGATAGAAGCACTGAACACTTATGAAAGCT
TCGACCCAGAGCTCGTACTGCTGGATATCGCGATGCCAGACATGAATGGTTTCGAAGTCTCACTTCATATCAGAGAAACC
TTCCCAGATTGGATCCCAATCATCTTCTTGAGTAGTCACGAAGAGCCCGAAATGATCGCAAAAGCAATAGAAGCAGGTGG
TGATGACTACTTGATCAAACCTGTCGACAAACTTGTTCTCAACTCTAAGCTCATGGCAATGCAGCGTATTGCGCATATGC
GTCGTGAGCTCAAGCAAGCGACTGCCCAGTTAGAGGAAATGAACTCTCTATTGCAAGAACAAGCCAACGAAGATAGTTTG
ACCAAGCTCTATAACCGTCGCTACATAGACCAAAAGCTAGAAACCATGATTGCGTGGCATGGACGTCATCATATGCCAAT
GGCGTTGATTCTTTTGGATGTAGACTTCTTTAAGCCATTCAATGACAACTACGGCCATATAGAAGGGGATCGCTGCCTAC
AAGCCATCGCAAATCAACTTAGAGCAACCTTCTGTCGTTCTGGAGAATATGTCGGCCGTTATGGTGGTGAAGAATTTGTC
ATCCTTCTAAATAGTACCGACGCGCAAACCGCAGAAAGAGAAGCGGAGAGGATTCAAGAGGCATTGTACTTCTTAGATTA
CCCACATGCATATTCAAGCGTAGCAAGTAGAGTGACAGTGTCACAGGGTGTGTTTGCGCTCCAACCAACGGGGAAAGATA
AAGTCGCCGATTTATATGCAACAGCAGACAGGGCGTTATATACGTCTAAATCCTTGGGAAGAAATACTTACACTGTAGTA
AATGCTAGTTAA

Upstream 100 bases:

>100_bases
TGATTACGTGACCGTTCGACAAAAAAATATAGCACGAAATTTGTCGCATAATGCAACAACCGTGCGTGTATGATATATGT
TTAGTAAAGACTGAGAAAAA

Downstream 100 bases:

>100_bases
ATCATAAAGATAGAAACTCTCAAATCATAGTGACACTGTCACTTGTTTAGGGTGTTTTTCTAAGGTAAGGCTTGAGAAGT
CTTAGAACCAAAAAACAAGC

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MERAMQPTGTSMRILLVDDVQLDRMQLAIRLKQQGHIVKAVGNGIEALNTYESFDPELVLLDIAMPDMNGFEVSLHIRET
FPDWIPIIFLSSHEEPEMIAKAIEAGGDDYLIKPVDKLVLNSKLMAMQRIAHMRRELKQATAQLEEMNSLLQEQANEDSL
TKLYNRRYIDQKLETMIAWHGRHHMPMALILLDVDFFKPFNDNYGHIEGDRCLQAIANQLRATFCRSGEYVGRYGGEEFV
ILLNSTDAQTAEREAERIQEALYFLDYPHAYSSVASRVTVSQGVFALQPTGKDKVADLYATADRALYTSKSLGRNTYTVV
NAS

Sequences:

>Translated_323_residues
MERAMQPTGTSMRILLVDDVQLDRMQLAIRLKQQGHIVKAVGNGIEALNTYESFDPELVLLDIAMPDMNGFEVSLHIRET
FPDWIPIIFLSSHEEPEMIAKAIEAGGDDYLIKPVDKLVLNSKLMAMQRIAHMRRELKQATAQLEEMNSLLQEQANEDSL
TKLYNRRYIDQKLETMIAWHGRHHMPMALILLDVDFFKPFNDNYGHIEGDRCLQAIANQLRATFCRSGEYVGRYGGEEFV
ILLNSTDAQTAEREAERIQEALYFLDYPHAYSSVASRVTVSQGVFALQPTGKDKVADLYATADRALYTSKSLGRNTYTVV
NAS
>Mature_323_residues
MERAMQPTGTSMRILLVDDVQLDRMQLAIRLKQQGHIVKAVGNGIEALNTYESFDPELVLLDIAMPDMNGFEVSLHIRET
FPDWIPIIFLSSHEEPEMIAKAIEAGGDDYLIKPVDKLVLNSKLMAMQRIAHMRRELKQATAQLEEMNSLLQEQANEDSL
TKLYNRRYIDQKLETMIAWHGRHHMPMALILLDVDFFKPFNDNYGHIEGDRCLQAIANQLRATFCRSGEYVGRYGGEEFV
ILLNSTDAQTAEREAERIQEALYFLDYPHAYSSVASRVTVSQGVFALQPTGKDKVADLYATADRALYTSKSLGRNTYTVV
NAS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=177, Percent_Identity=33.8983050847458, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=34.6368715083799, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693134, Length=205, Percent_Identity=30.2439024390244, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.7272727272727, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081881, Length=294, Percent_Identity=31.2925170068027, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=212, Percent_Identity=30.6603773584906, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=35.7142857142857, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=192, Percent_Identity=31.25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=36.6666666666667, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=32.5301204819277, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787487, Length=106, Percent_Identity=37.7358490566038, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788550, Length=127, Percent_Identity=31.496062992126, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693157, Length=113, Percent_Identity=32.7433628318584, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 36652; Mature: 36652

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERAMQPTGTSMRILLVDDVQLDRMQLAIRLKQQGHIVKAVGNGIEALNTYESFDPELVL
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEE
LDIAMPDMNGFEVSLHIRETFPDWIPIIFLSSHEEPEMIAKAIEAGGDDYLIKPVDKLVL
EEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEECHHHHHHH
NSKLMAMQRIAHMRRELKQATAQLEEMNSLLQEQANEDSLTKLYNRRYIDQKLETMIAWH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GRHHMPMALILLDVDFFKPFNDNYGHIEGDRCLQAIANQLRATFCRSGEYVGRYGGEEFV
CCCCCCEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
ILLNSTDAQTAEREAERIQEALYFLDYPHAYSSVASRVTVSQGVFALQPTGKDKVADLYA
EEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
TADRALYTSKSLGRNTYTVVNAS
HHHHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MERAMQPTGTSMRILLVDDVQLDRMQLAIRLKQQGHIVKAVGNGIEALNTYESFDPELVL
CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEE
LDIAMPDMNGFEVSLHIRETFPDWIPIIFLSSHEEPEMIAKAIEAGGDDYLIKPVDKLVL
EEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEECHHHHHHH
NSKLMAMQRIAHMRRELKQATAQLEEMNSLLQEQANEDSLTKLYNRRYIDQKLETMIAWH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GRHHMPMALILLDVDFFKPFNDNYGHIEGDRCLQAIANQLRATFCRSGEYVGRYGGEEFV
CCCCCCEEEEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
ILLNSTDAQTAEREAERIQEALYFLDYPHAYSSVASRVTVSQGVFALQPTGKDKVADLYA
EEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHH
TADRALYTSKSLGRNTYTVVNAS
HHHHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]