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The map label for this gene is nrdD [H]

Identifier: 156976928

GI number: 156976928

Start: 914865

End: 916985

Strand: Direct

Name: nrdD [H]

Synonym: VIBHAR_05713

Alternate gene names: 156976928

Gene position: 914865-916985 (Clockwise)

Preceding gene: 156976925

Following gene: 156976929

Centisome position: 41.51

GC content: 46.2

Gene sequence:

>2121_bases
GTGAAACCAATCGTAATCAAGCGTGACGGCTCAAGAGCTCCGTTCAACAGGGATCGTATCCAAGCAGCAGTAGAAGCCGC
AGCGGAAAACAAAGACAAAGATGTCGCCATTTATGCACTAAATGTTGCTCTGGCAGTTGAGTTACAGCTTCAGGATCACG
ATGAAGTTCACATTCATGAGATTCAAGACTTAGTCGAAAATGAACTCATGCAAGGTCCTTACAAAGCCCTAGCTCGTTCT
TACATTGAATACCGCCACGATCGCGACATCGCTCGTGAAAAGCAAAGCGCACTAACTCGCGAAATCGAAGGTCTGATTGA
AGAAAGCAACCTAGACCTAATCAACGAGAATGCGAACAAAGACGGTAAAGTAATTCCGACTCAACGTGACTTGTTGGCTG
GTATCGTTGCGAAACACTACGCGAAGACACATATCCTTCCTCGCGATGTGGTTCAAGCGCACGAAGTAGGTGACATTCAC
TACCACGATTTGGATTACGCACCGTTCTTCCCAATGTTTAACTGTATGCTTATCGATCTTAAAGGCATGCTAACGCACGG
CTTTAAAATGGGTAACGCTGAGATTGATACTCCAAAATCAATCTCTACTGCAACAGCAGTAACGGCACAGATCATTGCTC
AAGTAGCGAGCCACATTTACGGCGGTACAACCATCAACCGTATTGATGAAGTTCTAGAACCGTACGTAATGACAAGCTAC
GAGAAACACCTAGAGATCGCAAAAGAGTGGAACATTGCTGAGCCAGAAGAGTTCGCAAAAGCGCGCACTGAGAAAGAGTG
TTACGACGCTTTCCAATCTCTAGAATACGAAGTAAACACGCTACACACGGCGAACGGTCAAACACCATTCGTTACGTTCG
GTTTTGGTCTTGGTACAAGCTGGGCATCACGCCTTATCCAGAAGTCTATTCTGAAGAACCGCATTGCAGGTCTAGGTAAG
AACCGTAAAACAGCGGTATTCCCTAAACTTGTATTCGGCATCAAAGATGGCTTGAACTACAAATCAGAAGATCCAAACTA
CGACATCAAGCAACTTGCGCTTGAGTGTGCGTCTAAGCGTATGTACCCAGACATTCTTAACTACGACAAAGTAGTGGAAG
TAACGGGTTCATTCAAAACACCTATGGGCTGTCGTAGCTTCCTTGGTACTTACGAAGAAAACGGCGAGTTGATTCACGAA
GGTCGTAACAATCTTGGCGTAGTAAGCTTGAACCTTCCTCGTATCGCTATTCGTGCAAACGGCAGTGAAGAGAAATTCTA
CGAGCTTCTAAACGATCGCCTACGTCTTGCACGTAAAGCACTAGAAACACGTATCTCTCGTCTAGAAAACGTGAAAGCAC
GTGTTGCTCCGATCCTTTACATGGAAGGTGCGTGTGGTGTTCGTCTGAAAGCAGACGACTCAATCGCAGATATCTTCAAG
AACGGTCGTGCGTCTATTTCTCTTGGTTACATCGGTGTACACGAGACAATTAACGCGCTATTCGGTACAGAAGCGCACGT
TTACGATGACGCTGTTCTGCGTGAAAAAGCAGTAGCAATCATCAAGCACCTGAAAGACACAGTAAACGGTTGGGCAGAAG
ATACTGGTTACGGTTTCAGCCTATACGCGACGCCAAGTGAAAACCTATGTAGCCGTTTCTGCCGCATCGACGCTAAAGAG
TTCGGCGTAATTAAAGGCGTAACAGACAAAGGTTACTACACAAACAGCTTCCACCTAGATGTTGAGAAGAAGGTGAACCC
GTACGACAAGATCGACTTTGAGATGCCTTACCCAGAAATCTCAAGCGGCGGCTTTATCTGTTACGGCGAGTTCCCGAACA
TGCAACGTAACGTTGAAGCACTAGAAAACGTATGGGATTACAGTTACACCCGCGTACCTTACTACGGTACAAACACGCCA
ATTGATGAGTGTTACGAGTGTGGCTACAACGGTGAGTTTGACTGTACAAGTAAAGGCTTCACTTGCCCAAGTTGTGGCAA
CCATGACTCAACCAAAGTGTCAGTAACACGTCGTGTTTGTGGCTACCTAGGCAGCCCAGATGCGCGTCCGTTTAACTTCG
GTAAGCAAGAAGAAGTAAAGCGTCGAGTTAAGCACCTGTAA

Upstream 100 bases:

>100_bases
GTTAAATACGCCACAATATATTGTGTCATCAGAATAAAAAATAACCCCATATAGTGTATTTGTGGATAAGTCTGTGAGTA
TTTTGGGGTAAGGAGAAAAA

Downstream 100 bases:

>100_bases
GGTTTACTTAAGCTCCAACCCAATAATGAAAATCAACCTGTCGTGGGTTGATTTTCTTTTCTAGCCAGCAAAACAAGGCA
CGATTATGAATTACCACCAA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MKPIVIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHEIQDLVENELMQGPYKALARS
YIEYRHDRDIAREKQSALTREIEGLIEESNLDLINENANKDGKVIPTQRDLLAGIVAKHYAKTHILPRDVVQAHEVGDIH
YHDLDYAPFFPMFNCMLIDLKGMLTHGFKMGNAEIDTPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLEPYVMTSY
EKHLEIAKEWNIAEPEEFAKARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWASRLIQKSILKNRIAGLGK
NRKTAVFPKLVFGIKDGLNYKSEDPNYDIKQLALECASKRMYPDILNYDKVVEVTGSFKTPMGCRSFLGTYEENGELIHE
GRNNLGVVSLNLPRIAIRANGSEEKFYELLNDRLRLARKALETRISRLENVKARVAPILYMEGACGVRLKADDSIADIFK
NGRASISLGYIGVHETINALFGTEAHVYDDAVLREKAVAIIKHLKDTVNGWAEDTGYGFSLYATPSENLCSRFCRIDAKE
FGVIKGVTDKGYYTNSFHLDVEKKVNPYDKIDFEMPYPEISSGGFICYGEFPNMQRNVEALENVWDYSYTRVPYYGTNTP
IDECYECGYNGEFDCTSKGFTCPSCGNHDSTKVSVTRRVCGYLGSPDARPFNFGKQEEVKRRVKHL

Sequences:

>Translated_706_residues
MKPIVIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHEIQDLVENELMQGPYKALARS
YIEYRHDRDIAREKQSALTREIEGLIEESNLDLINENANKDGKVIPTQRDLLAGIVAKHYAKTHILPRDVVQAHEVGDIH
YHDLDYAPFFPMFNCMLIDLKGMLTHGFKMGNAEIDTPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLEPYVMTSY
EKHLEIAKEWNIAEPEEFAKARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWASRLIQKSILKNRIAGLGK
NRKTAVFPKLVFGIKDGLNYKSEDPNYDIKQLALECASKRMYPDILNYDKVVEVTGSFKTPMGCRSFLGTYEENGELIHE
GRNNLGVVSLNLPRIAIRANGSEEKFYELLNDRLRLARKALETRISRLENVKARVAPILYMEGACGVRLKADDSIADIFK
NGRASISLGYIGVHETINALFGTEAHVYDDAVLREKAVAIIKHLKDTVNGWAEDTGYGFSLYATPSENLCSRFCRIDAKE
FGVIKGVTDKGYYTNSFHLDVEKKVNPYDKIDFEMPYPEISSGGFICYGEFPNMQRNVEALENVWDYSYTRVPYYGTNTP
IDECYECGYNGEFDCTSKGFTCPSCGNHDSTKVSVTRRVCGYLGSPDARPFNFGKQEEVKRRVKHL
>Mature_706_residues
MKPIVIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHEIQDLVENELMQGPYKALARS
YIEYRHDRDIAREKQSALTREIEGLIEESNLDLINENANKDGKVIPTQRDLLAGIVAKHYAKTHILPRDVVQAHEVGDIH
YHDLDYAPFFPMFNCMLIDLKGMLTHGFKMGNAEIDTPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLEPYVMTSY
EKHLEIAKEWNIAEPEEFAKARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWASRLIQKSILKNRIAGLGK
NRKTAVFPKLVFGIKDGLNYKSEDPNYDIKQLALECASKRMYPDILNYDKVVEVTGSFKTPMGCRSFLGTYEENGELIHE
GRNNLGVVSLNLPRIAIRANGSEEKFYELLNDRLRLARKALETRISRLENVKARVAPILYMEGACGVRLKADDSIADIFK
NGRASISLGYIGVHETINALFGTEAHVYDDAVLREKAVAIIKHLKDTVNGWAEDTGYGFSLYATPSENLCSRFCRIDAKE
FGVIKGVTDKGYYTNSFHLDVEKKVNPYDKIDFEMPYPEISSGGFICYGEFPNMQRNVEALENVWDYSYTRVPYYGTNTP
IDECYECGYNGEFDCTSKGFTCPSCGNHDSTKVSVTRRVCGYLGSPDARPFNFGKQEEVKRRVKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=707, Percent_Identity=77.0862800565771, Blast_Score=1160, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 79596; Mature: 79596

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIVIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHE
CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCHHHH
IQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINENANK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
DGKVIPTQRDLLAGIVAKHYAKTHILPRDVVQAHEVGDIHYHDLDYAPFFPMFNCMLIDL
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
KGMLTHGFKMGNAEIDTPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLEPYVMTSY
HHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EKHLEIAKEWNIAEPEEFAKARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCHH
WASRLIQKSILKNRIAGLGKNRKTAVFPKLVFGIKDGLNYKSEDPNYDIKQLALECASKR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
MYPDILNYDKVVEVTGSFKTPMGCRSFLGTYEENGELIHEGRNNLGVVSLNLPRIAIRAN
CCHHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCEEEEEEC
GSEEKFYELLNDRLRLARKALETRISRLENVKARVAPILYMEGACGVRLKADDSIADIFK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEECCCHHHHHHH
NGRASISLGYIGVHETINALFGTEAHVYDDAVLREKAVAIIKHLKDTVNGWAEDTGYGFS
CCCCEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LYATPSENLCSRFCRIDAKEFGVIKGVTDKGYYTNSFHLDVEKKVNPYDKIDFEMPYPEI
EEECCCHHHHHHHHHCCHHHCCEEECCCCCCEEECEEEEEECCCCCCCCCCCCCCCCCCC
SSGGFICYGEFPNMQRNVEALENVWDYSYTRVPYYGTNTPIDECYECGYNGEFDCTSKGF
CCCCEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCC
TCPSCGNHDSTKVSVTRRVCGYLGSPDARPFNFGKQEEVKRRVKHL
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKPIVIKRDGSRAPFNRDRIQAAVEAAAENKDKDVAIYALNVALAVELQLQDHDEVHIHE
CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECCCCCCHHHH
IQDLVENELMQGPYKALARSYIEYRHDRDIAREKQSALTREIEGLIEESNLDLINENANK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
DGKVIPTQRDLLAGIVAKHYAKTHILPRDVVQAHEVGDIHYHDLDYAPFFPMFNCMLIDL
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
KGMLTHGFKMGNAEIDTPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLEPYVMTSY
HHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EKHLEIAKEWNIAEPEEFAKARTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEECCCCHH
WASRLIQKSILKNRIAGLGKNRKTAVFPKLVFGIKDGLNYKSEDPNYDIKQLALECASKR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
MYPDILNYDKVVEVTGSFKTPMGCRSFLGTYEENGELIHEGRNNLGVVSLNLPRIAIRAN
CCHHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEEEECCCEEEEEEC
GSEEKFYELLNDRLRLARKALETRISRLENVKARVAPILYMEGACGVRLKADDSIADIFK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEEECCCHHHHHHH
NGRASISLGYIGVHETINALFGTEAHVYDDAVLREKAVAIIKHLKDTVNGWAEDTGYGFS
CCCCEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LYATPSENLCSRFCRIDAKEFGVIKGVTDKGYYTNSFHLDVEKKVNPYDKIDFEMPYPEI
EEECCCHHHHHHHHHCCHHHCCEEECCCCCCEEECEEEEEECCCCCCCCCCCCCCCCCCC
SSGGFICYGEFPNMQRNVEALENVWDYSYTRVPYYGTNTPIDECYECGYNGEFDCTSKGF
CCCCEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCC
TCPSCGNHDSTKVSVTRRVCGYLGSPDARPFNFGKQEEVKRRVKHL
CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]