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The map label for this gene is 156976890

Identifier: 156976890

GI number: 156976890

Start: 877291

End: 877617

Strand: Reverse

Name: 156976890

Synonym: VIBHAR_05667

Alternate gene names: NA

Gene position: 877617-877291 (Counterclockwise)

Preceding gene: 156976891

Following gene: 156976889

Centisome position: 39.82

GC content: 44.04

Gene sequence:

>327_bases
ATGCTTAGATACGTGCTTCTAGCGTCTCTTATTCTCTCTTCCTCTGTTGTGGCGAAACCATTCGGTGACGCAGAAAAAGG
CAAACTTAAATCACCAAGCTGTGTCTATTGTCATGGTTCGAATGGCATAACGACTAACGACGCTTACCCTAACCTAGCTG
GCCAGAATGCTCAGTACCTGTATGATTCTATGAAAGCCTATCAAGATGGGCTTCGCTTAGGCCCTTTGGCTGAGATGATG
GCAGCCCAATTACGCATGTTGAATGATGAAGATTTACGCGATGTTGCTGCGTTTTATTCAGAACAACTATCTCATACAGA
AAAGTGA

Upstream 100 bases:

>100_bases
CCTTAAATCTATGCTTTAACTTGATTTTGATCATTGAGCTTCCCCTAAGGGGAAGCTTTATTCTATCTCGAAACCAATAT
TTTAAATTCGAGAACTATCC

Downstream 100 bases:

>100_bases
ATAATTATGGGGCTTGTGAATCGCTACAAGTCCTAACTCTGTTTTCATCCATACAACATCCAGCCAAAATAATTAACCAA
TAAATCATTGATAATCAACT

Product: cytochrome-c oxidase

Products: NA

Alternate protein names: Cytochrome c554 [H]

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MLRYVLLASLILSSSVVAKPFGDAEKGKLKSPSCVYCHGSNGITTNDAYPNLAGQNAQYLYDSMKAYQDGLRLGPLAEMM
AAQLRMLNDEDLRDVAAFYSEQLSHTEK

Sequences:

>Translated_108_residues
MLRYVLLASLILSSSVVAKPFGDAEKGKLKSPSCVYCHGSNGITTNDAYPNLAGQNAQYLYDSMKAYQDGLRLGPLAEMM
AAQLRMLNDEDLRDVAAFYSEQLSHTEK
>Mature_108_residues
MLRYVLLASLILSSSVVAKPFGDAEKGKLKSPSCVYCHGSNGITTNDAYPNLAGQNAQYLYDSMKAYQDGLRLGPLAEMM
AAQLRMLNDEDLRDVAAFYSEQLSHTEK

Specific function: Unknown

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 11882; Mature: 11882

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYVLLASLILSSSVVAKPFGDAEKGKLKSPSCVYCHGSNGITTNDAYPNLAGQNAQYL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHH
YDSMKAYQDGLRLGPLAEMMAAQLRMLNDEDLRDVAAFYSEQLSHTEK
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRYVLLASLILSSSVVAKPFGDAEKGKLKSPSCVYCHGSNGITTNDAYPNLAGQNAQYL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHH
YDSMKAYQDGLRLGPLAEMMAAQLRMLNDEDLRDVAAFYSEQLSHTEK
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2829828 [H]