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The map label for this gene is insF1 [C]

Identifier: 156976874

GI number: 156976874

Start: 858046

End: 858747

Strand: Direct

Name: insF1 [C]

Synonym: VIBHAR_05650

Alternate gene names: 156976874

Gene position: 858046-858747 (Clockwise)

Preceding gene: 156976873

Following gene: 156976876

Centisome position: 38.93

GC content: 47.58

Gene sequence:

>702_bases
ATGATTGACGAAATTCACCTTCGGTATCCGTTCATGGGGAGCAGACGCATTCGAAATGAGATGGCTAAAAAAGGCCATAA
CGTTAATCGTAAACGTGTCGTTCGGCTCATGCGAGACATGGGCATTAGGGCTATTTACCCCAAGCCTAGAACGACCCTAG
CGAACAAAGCACACAAGGTTTATCCCTACCTTTTGCGTGATATCGAAGTCACTTACCCGAACCAAGCTTGGGCGATTGAC
ATCACGTATATCCCGATGGCTAAGGGGTTCCTGTATTTAGTCGCCATTATCGACTGGTATAGCCGAAAGGTGCTGTCTTG
GCGGCTATCCAACACCATGGACACGAGCTTTTGTATCGAAGCCCTTGAAGACGCGCTTAAACATTATGGCCCGCCAGATA
TCTTCAACTCAGATCAAGGCAGTCAGTTTACCAGCACCGAATTCACACAGAAGCTACTCGACCATGGAGTCAGGATAAGT
ATGGATGGGAAAGGACGCTGGGTCGACAATGTTTTCATAGAGCGATTATGGAGAAGCCTGAAATATGAGGAGGTTTACTT
AAAAGCTTACACCACGCCCCGAGAAGCAGAGCTTGAAATCGGCCACTACATGGTGTTTTATAATGAGGAGCGTAACCATC
AGGGACTCAATGACCTCACTCCTGATGAAGCCTACTTTGGTAGGCAGAGATACGCTGCATGA

Upstream 100 bases:

>100_bases
ATTGCCAATAAAACGCCAGTGTGAGCTTCTCAGTATTGCTCGCTCTACTGCTTACTATCAACCCATAGGACTCTCTGCTG
AAGAGATTGTACTACAGCGC

Downstream 100 bases:

>100_bases
GCTGGATCAACCACTTAAGAAGTTAGCTTATGTGTCCAACCATTGGGGTCCACTTCTCTCTGAATTTCAAACTCGCCAAA
AAACTCCATTAAAGGGATGA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIRAIYPKPRTTLANKAHKVYPYLLRDIEVTYPNQAWAID
ITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIEALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRIS
MDGKGRWVDNVFIERLWRSLKYEEVYLKAYTTPREAELEIGHYMVFYNEERNHQGLNDLTPDEAYFGRQRYAA

Sequences:

>Translated_233_residues
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIRAIYPKPRTTLANKAHKVYPYLLRDIEVTYPNQAWAID
ITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIEALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRIS
MDGKGRWVDNVFIERLWRSLKYEEVYLKAYTTPREAELEIGHYMVFYNEERNHQGLNDLTPDEAYFGRQRYAA
>Mature_233_residues
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIRAIYPKPRTTLANKAHKVYPYLLRDIEVTYPNQAWAID
ITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIEALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRIS
MDGKGRWVDNVFIERLWRSLKYEEVYLKAYTTPREAELEIGHYMVFYNEERNHQGLNDLTPDEAYFGRQRYAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=196, Percent_Identity=33.1632653061224, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1788405, Length=217, Percent_Identity=30.8755760368664, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787263, Length=217, Percent_Identity=30.8755760368664, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786753, Length=217, Percent_Identity=30.8755760368664, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786570, Length=217, Percent_Identity=30.8755760368664, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786490, Length=217, Percent_Identity=30.8755760368664, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789981, Length=215, Percent_Identity=30.6976744186047, Blast_Score=104, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 27603; Mature: 27603

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIRAIYPKPRTTLANKAHKV
CCCCEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHH
YPYLLRDIEVTYPNQAWAIDITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIE
HHHHHHHEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRISMDGKGRWVDNVFIERLWRSL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHC
KYEEVYLKAYTTPREAELEIGHYMVFYNEERNHQGLNDLTPDEAYFGRQRYAA
CHHEEEEEEECCCCCCEEEECEEEEEECCCCCCCCCCCCCCCHHHHCHHHCCC
>Mature Secondary Structure
MIDEIHLRYPFMGSRRIRNEMAKKGHNVNRKRVVRLMRDMGIRAIYPKPRTTLANKAHKV
CCCCEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHH
YPYLLRDIEVTYPNQAWAIDITYIPMAKGFLYLVAIIDWYSRKVLSWRLSNTMDTSFCIE
HHHHHHHEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ALEDALKHYGPPDIFNSDQGSQFTSTEFTQKLLDHGVRISMDGKGRWVDNVFIERLWRSL
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHC
KYEEVYLKAYTTPREAELEIGHYMVFYNEERNHQGLNDLTPDEAYFGRQRYAA
CHHEEEEEEECCCCCCEEEECEEEEEECCCCCCCCCCCCCCCHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2159625; 2824781 [H]