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The map label for this gene is nirD [H]

Identifier: 156976816

GI number: 156976816

Start: 797437

End: 797772

Strand: Direct

Name: nirD [H]

Synonym: VIBHAR_05592

Alternate gene names: 156976816

Gene position: 797437-797772 (Clockwise)

Preceding gene: 156976815

Following gene: 156976819

Centisome position: 36.18

GC content: 44.05

Gene sequence:

>336_bases
ATGGCAGCGTTAACCAAAGTGAAATTGTGTCAGCTTGATGACTTAATGCCGTTTCTCGGTGCCACTGTATTGATTGAAGG
CGAGCATGTCGCGTTATTCTACATTCCTGATAGCGGTGTTTACGCCGTTCAAGATTGGGACCCAATTGGTAAGGCTTATG
TAATGAGTCGAGGGATTGTCGGTGATATTGATGGTAAGATGTGTGTTGCATCACCACTGTACAAACAGCATTTCAGTTTA
AAGAGTGGGCAATGTTTGGAAGACGATGCGCACTGTCTAAAAACGTGGCAAGTAACGGTCGACGATAATCAGGTTTGTCA
TCTAGTCGAAGAATGA

Upstream 100 bases:

>100_bases
GCAACGCTTCCGTCCTTTCTTGAACAGCACGTCGGGCAGCAAAGTCTTGCCGTACCAGCGTGTGCGCGGTCAGCGTATTC
CAGTGAAACAGGAGGTGTAA

Downstream 100 bases:

>100_bases
TCCTCGAAATTAGCTTGCTCGATATGAGTAAATTCTTAGCGTAAGAGGCAAGCGAATAAAGCTCCAGAGACAGCACAGTA
TGGCTCTGGAGCTTTTTACT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MAALTKVKLCQLDDLMPFLGATVLIEGEHVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDIDGKMCVASPLYKQHFSL
KSGQCLEDDAHCLKTWQVTVDDNQVCHLVEE

Sequences:

>Translated_111_residues
MAALTKVKLCQLDDLMPFLGATVLIEGEHVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDIDGKMCVASPLYKQHFSL
KSGQCLEDDAHCLKTWQVTVDDNQVCHLVEE
>Mature_110_residues
AALTKVKLCQLDDLMPFLGATVLIEGEHVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDIDGKMCVASPLYKQHFSLK
SGQCLEDDAHCLKTWQVTVDDNQVCHLVEE

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=99, Percent_Identity=38.3838383838384, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12288; Mature: 12157

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALTKVKLCQLDDLMPFLGATVLIEGEHVALFYIPDSGVYAVQDWDPIGKAYVMSRGIV
CCCCCCEEECCHHHHHHHCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCEEECCCCCE
GDIDGKMCVASPLYKQHFSLKSGQCLEDDAHCLKTWQVTVDDNQVCHLVEE
ECCCCCEEECCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECC
>Mature Secondary Structure 
AALTKVKLCQLDDLMPFLGATVLIEGEHVALFYIPDSGVYAVQDWDPIGKAYVMSRGIV
CCCCCEEECCHHHHHHHCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCEEECCCCCE
GDIDGKMCVASPLYKQHFSLKSGQCLEDDAHCLKTWQVTVDDNQVCHLVEE
ECCCCCEEECCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]